Gene name: PRP11
Reference locus (S288C): YDL043C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor PRP11; Subunit of the SF3a splicing factor complex; required for spliceosome assembly
Top 10 interactors (score): HSH49 (0.999); SMD2 (0.999); SNU66 (0.999); SME1 (0.999); PRP31 (0.999); CEF1 (0.999); YSF3 (0.999); PRP6 (0.999); HSH155 (0.999); BUD31 (0.999); SMB1 (0.999); RDS3 (0.999); LEA1 (0.999); PRP19 (0.999); CUS1 (0.999); SMD1 (0.999); PRP4 (0.999); PRP9 (0.999); PRP21 (0.999); SMD3 (0.999)
Homologues (species, bitscore): SF3A2 (Homo sapiens, 77.0); Sf3a2 (Mus musculus, 77.0); sf3a2 (Danio rerio, 84.7); sf3a2 (Xenopus tropicalis, 87.4); CG10754 (Drosophila melanogaster, 80.1); repo-1 (Caenorhabditis elegans, 82.0); AT2G32600 (Arabidopsis thaliana, 69.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:360301-361101:- | gene-YDL043C_AKU4011 | rna-NM_001180102.1_AKU4011 | cds-NP_010241.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:188603-189403:+ | gene-YDL043C_BG1 | rna-NM_001180102.1_BG1 | cds-NP_010241.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:378781-379581:- | gene-YDL043C_Bruggeman | rna-NM_001180102.1_Bruggeman | cds-NP_010241.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:375002-375802:- | gene-YDL043C_CAT1 | rna-NM_001180102.1_CAT1 | cds-NP_010241.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:358551-359351:- | gene-YDL043C_CBS1585 | rna-NM_001180102.1_CBS1585 | cds-NP_010241.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:375221-376021:- | gene-YDL043C_CBS436 | rna-NM_001180102.1_CBS436 | cds-NP_010241.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:356258-357058:- | gene-YDL043C_CBS6412 | rna-NM_001180102.1_CBS6412 | cds-NP_010241.1_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:376590-377390:- | gene-YDL043C_CBS6413 | rna-NM_001180102.1_CBS6413 | cds-NP_010241.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:374540-375340:- | gene-YDL043C_CENPK1137D | rna-NM_001180102.1_CENPK1137D | cds-NP_010241.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:371084-371884:- | gene-YDL043C_EthanolRed | rna-NM_001180102.1_EthanolRed | cds-NP_010241.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:377312-378112:- | gene-YDL043C_FaliES1 | rna-NM_001180102.1_FaliES1 | cds-NP_010241.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000097.1:7675-8475:+ | gene-YDL043C_JAY291 | rna-NM_001180102.1_JAY291 | cds-NP_010241.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:375448-376248:- | gene-YDL043C_MUCL30387 | rna-NM_001180102.1_MUCL30387 | cds-NP_010241.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:366566-367366:- | gene-YDL043C_MUCL30388 | rna-NM_001180102.1_MUCL30388 | cds-NP_010241.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:359755-360555:- | gene-YDL043C_MUCL39482 | rna-NM_001180102.1_MUCL39482 | cds-NP_010241.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:281671-282471:- | gene-YDL043C_MUCL42920 | rna-NM_001180102.1_MUCL42920 | cds-NP_010241.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:375603-376403:- | gene-YDL043C_NCIM3186 | rna-NM_001180102.1_NCIM3186 | cds-NP_010241.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:359636-360436:- | gene-YDL043C_NCYC1407 | rna-NM_001180102.1_NCYC1407 | cds-NP_010241.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:366812-367612:- | gene-YDL043C_PE2H3 | rna-NM_001180102.1_PE2H3 | cds-NP_010241.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:366814-367614:- | gene-YDL043C_PE2H4 | rna-NM_001180102.1_PE2H4 | cds-NP_010241.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:375680-376480:- | gene-YDL043C_S288C | rna-NM_001180102.1_S288C | cds-NP_010241.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:58448-59248:+ | gene-YDL043C_SA1 | rna-NM_001180102.1_SA1 | cds-NP_010241.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:376774-377574:- | gene-YDL043C_ThermosaccDry | rna-NM_001180102.1_ThermosaccDry | cds-NP_010241.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:379701-380501:- | gene-YDL043C_VR1 | rna-NM_001180102.1_VR1 | cds-NP_010241.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:374715-375515:- | gene-YDL043C_ZTW1 | rna-NM_001180102.1_ZTW1 | cds-NP_010241.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:377140-377940:- | gene-YDL043C_Sparadoxus | rna-NM_001180102.1_Sparadoxus | cds-NP_010241.1_Sparadoxus | 85.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |