PRM7 (YDL039C)


Gene profile

Gene name: PRM7
Reference locus (S288C): YDL039C
Gene biotype: protein_coding

Description: Pheromone-regulated protein; predicted to have one transmembrane segment; promoter contains Gcn4p binding elements; in W303 strain one continuous open reading frame comprising of YDL037C, the intergenic region and YDL039C encodes the IMI1

Top 10 interactors (score): BSC1 (0.98); YOR338W (0.8); YMR317W (0.779); YBR238C (0.777); YDL196W (0.735); YAL064W-B (0.712); RDL1 (0.711); YHR213W-A (0.697); IFH1 (0.64); ISF1 (0.62); RTA1 (0.617); CIS1 (0.613); TOD6 (0.593); SGE1 (0.57); MST27 (0.57); TIR2 (0.563); CSS1 (0.551); RPH1 (0.54); AQR1 (0.54); YHR213W (0.526)

Homologues (species, bitscore): MAGEE1 (Homo sapiens, 57.4); Zan (Mus musculus, 71.6); CG30069 (Drosophila melanogaster, 67.0)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005298.1:366609-368777:- gene-YDL039C_AKU4011 rna-NM_001180098.1_AKU4011 cds-NP_010245.2_AKU4011 86.0 94.8 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000102.1:180946-183096:+ gene-YDL039C_BG1 rna-NM_001180098.1_BG1 cds-NP_010245.2_BG1 96.7 99.8 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005506.1:385089-387239:- gene-YDL039C_Bruggeman rna-NM_001180098.1_Bruggeman cds-NP_010245.2_Bruggeman 96.7 99.8 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005522.1:381307-383395:- gene-YDL039C_CAT1 rna-NM_001180098.1_CAT1 cds-NP_010245.2_CAT1 91.4 96.9 Verified 1 1 0 False False True False False
CBS1585 GCA_001738375.1 Sake Asia CM005362.1:364859-366905:- gene-YDL039C_CBS1585 rna-NM_001180098.1_CBS1585 cds-NP_010245.2_CBS1585 84.8 93.3 Unannotated 1 1 0 False False False True False
CBS436 GCA_001738355.1 Sake Asia CM005346.1:381526-383618:- gene-YDL039C_CBS436 rna-NM_001180098.1_CBS436 cds-NP_010245.2_CBS436 97.5 99.5 Mismatch 1 1 0 False False True False False
CBS6412 GCA_001738345.1 Sake Asia CM005330.1:362566-364672:- gene-YDL039C_CBS6412 rna-NM_001180098.1_CBS6412 cds-NP_010245.2_CBS6412 83.2 94.0 Unannotated 1 1 0 False False True False False
CBS6413 GCA_001738265.1 Sake Asia CM005314.1:382898-385066:- gene-YDL039C_CBS6413 rna-NM_001180098.1_CBS6413 cds-NP_010245.2_CBS6413 86.1 94.8 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001525.1:380845-382941:- gene-YDL039C_CENPK1137D rna-NM_001180098.1_CENPK1137D cds-NP_010245.2_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005474.1:377392-379405:- gene-YDL039C_EthanolRed rna-NM_001180098.1_EthanolRed cds-NP_010245.2_EthanolRed 90.2 94.4 Verified 1 1 0 False False True False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005538.1:383620-385633:- gene-YDL039C_FaliES1 rna-NM_001180098.1_FaliES1 cds-NP_010245.2_FaliES1 90.2 94.4 Verified 1 1 0 False False True False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000097.1:176-2171:+ gene-YDL039C_JAY291 rna-NM_001180098.1_JAY291 cds-NP_010245.2_JAY291 90.2 94.4 Verified 1 1 0 False False True False False
MUCL30387 GCA_001738515.1 Bread Europe CM005410.1:381756-383906:- gene-YDL039C_MUCL30387 rna-NM_001180098.1_MUCL30387 cds-NP_010245.2_MUCL30387 96.7 99.8 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005442.1:372874-375024:- gene-YDL039C_MUCL30388 rna-NM_001180098.1_MUCL30388 cds-NP_010245.2_MUCL30388 96.7 99.8 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005282.1:366063-368109:- gene-YDL039C_MUCL39482 rna-NM_001180098.1_MUCL39482 cds-NP_010245.2_MUCL39482 84.8 93.3 Unannotated 1 1 0 False False False True False
MUCL42920 GCA_001738485.1 Bread Europe CM005426.1:287980-290131:- gene-YDL039C_MUCL42920 rna-NM_001180098.1_MUCL42920 cds-NP_010245.2_MUCL42920 96.6 99.8 Unannotated 1 1 0 False False False True False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011813.1:381908-384004:- gene-YDL039C_NCIM3186 rna-NM_001180098.1_NCIM3186 cds-NP_010245.2_NCIM3186 98.1 99.9 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005266.1:365944-368026:- gene-YDL039C_NCYC1407 rna-NM_001180098.1_NCYC1407 cds-NP_010245.2_NCYC1407 84.9 94.1 Unannotated 1 1 0 False False False True False
PE2H3 GCA_905220325.1 Bioethanol South America HG994143.1:373116-375111:- gene-YDL039C_PE2H3 rna-NM_001180098.1_PE2H3 cds-NP_010245.2_PE2H3 90.2 94.4 Verified 1 1 0 False False True False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999875.1:373119-375164:- gene-YDL039C_PE2H4 rna-NM_001180098.1_PE2H4 cds-NP_010245.2_PE2H4 95.5 97.4 Unannotated 1 1 0 False False True False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001136.10:381985-384081:- gene-YDL039C_S288C rna-NM_001180098.1_S288C cds-NP_010245.2_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000010.1:50949-52944:+ gene-YDL039C_SA1 rna-NM_001180098.1_SA1 cds-NP_010245.2_SA1 90.2 94.4 Verified 1 1 0 False False True False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005490.1:383082-385095:- gene-YDL039C_ThermosaccDry rna-NM_001180098.1_ThermosaccDry cds-NP_010245.2_ThermosaccDry 90.2 94.4 Verified 1 1 0 False False True False False
VR1 GCA_001738595.1 Bioethanol South America CM005458.1:386006-388051:- gene-YDL039C_VR1 rna-NM_001180098.1_VR1 cds-NP_010245.2_VR1 95.5 97.4 Unannotated 1 1 0 False False True False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000006.1:381023-383036:- gene-YDL039C_ZTW1 rna-NM_001180098.1_ZTW1 cds-NP_010245.2_ZTW1 90.3 94.4 Verified 1 1 0 False False True False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047490.1:383457-385423:- gene-YDL039C_Sparadoxus rna-NM_001180098.1_Sparadoxus cds-NP_010245.2_Sparadoxus 67.5 89.7 Verified 1 1 0 False False False True False

Additional files