Gene name: PRI1
Reference locus (S288C): YIR008C
Gene biotype: protein_coding
Description: Subunit of DNA primase; DNA primase is required for DNA synthesis and double-strand break repair; Belongs to the eukaryotic-type primase small subunit family
Top 10 interactors (score): POL2 (0.999); MCM2 (0.999); DPB2 (0.999); POL1 (0.999); POL12 (0.999); PRI2 (0.999); POL3 (0.999); POL31 (0.998); RFA2 (0.998); MCM3 (0.997); MCM5 (0.997); RFA1 (0.997); CDC6 (0.997); MCM4 (0.997); CDC45 (0.997); MCM6 (0.996); MCM10 (0.995); MCM7 (0.995); POL30 (0.994); RAD27 (0.993)
Homologues (species, bitscore): PRIM1 (Homo sapiens, 246.1); Prim1 (Mus musculus, 249.2); prim1 (Danio rerio, 246.1); prim1 (Xenopus tropicalis, 233.4); Pri50 (Drosophila melanogaster, 242.7); pri-1 (Caenorhabditis elegans, 208.4); POLA3 (Arabidopsis thaliana, 251.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:372422-373651:- | gene-YIR008C_AKU4011 | rna-NM_001179530.1_AKU4011 | cds-NP_012273.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:52914-54143:+ | gene-YIR008C_BG1 | rna-NM_001179530.1_BG1 | cds-NP_012273.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:376838-378067:- | gene-YIR008C_Bruggeman | rna-NM_001179530.1_Bruggeman | cds-NP_012273.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:363563-364792:- | gene-YIR008C_CAT1 | rna-NM_001179530.1_CAT1 | cds-NP_012273.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:372457-373686:- | gene-YIR008C_CBS1585 | rna-NM_001179530.1_CBS1585 | cds-NP_012273.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:365118-366347:- | gene-YIR008C_CBS436 | rna-NM_001179530.1_CBS436 | cds-NP_012273.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:367940-369169:- | gene-YIR008C_CBS6412 | rna-NM_001179530.1_CBS6412 | cds-NP_012273.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:364537-365766:- | gene-YIR008C_CBS6413 | rna-NM_001179530.1_CBS6413 | cds-NP_012273.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:365136-366365:- | gene-YIR008C_CENPK1137D | rna-NM_001179530.1_CENPK1137D | cds-NP_012273.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:355506-356735:- | gene-YIR008C_EthanolRed | rna-NM_001179530.1_EthanolRed | cds-NP_012273.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:374233-375462:- | gene-YIR008C_FaliES1 | rna-NM_001179530.1_FaliES1 | cds-NP_012273.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:16500-17729:+ | gene-YIR008C_JAY291 | rna-NM_001179530.1_JAY291 | cds-NP_012273.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:374094-375323:- | gene-YIR008C_MUCL30387 | rna-NM_001179530.1_MUCL30387 | cds-NP_012273.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:370863-372092:- | gene-YIR008C_MUCL30388 | rna-NM_001179530.1_MUCL30388 | cds-NP_012273.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:373092-374321:- | gene-YIR008C_MUCL39482 | rna-NM_001179530.1_MUCL39482 | cds-NP_012273.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:376661-377890:- | gene-YIR008C_MUCL42920 | rna-NM_001179530.1_MUCL42920 | cds-NP_012273.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:373077-374306:- | gene-YIR008C_NCIM3186 | rna-NM_001179530.1_NCIM3186 | cds-NP_012273.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:377319-378548:- | gene-YIR008C_NCYC1407 | rna-NM_001179530.1_NCYC1407 | cds-NP_012273.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:367143-368372:- | gene-YIR008C_PE2H3 | rna-NM_001179530.1_PE2H3 | cds-NP_012273.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:361849-363078:- | gene-YIR008C_PE2H4 | rna-NM_001179530.1_PE2H4 | cds-NP_012273.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:373077-374306:- | gene-YIR008C_S288C | rna-NM_001179530.1_S288C | cds-NP_012273.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:47926-49155:- | gene-YIR008C_SA1 | rna-NM_001179530.1_SA1 | cds-NP_012273.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:371837-373066:- | gene-YIR008C_ThermosaccDry | rna-NM_001179530.1_ThermosaccDry | cds-NP_012273.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:367916-369145:- | gene-YIR008C_VR1 | rna-NM_001179530.1_VR1 | cds-NP_012273.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:345836-347065:- | gene-YIR008C_ZTW1 | rna-NM_001179530.1_ZTW1 | cds-NP_012273.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:367264-368493:- | gene-YIR008C_Sparadoxus | rna-NM_001179530.1_Sparadoxus | cds-NP_012273.1_Sparadoxus | 91.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |