Gene name: PRE9
Reference locus (S288C): YGR135W
Gene biotype: protein_coding
Description: Alpha 3 subunit of the 20S proteasome; the only nonessential 20S subunit; may be replaced by the alpha 4 subunit (Pre6p) under stress conditions to create a more active proteasomal isoform; Belongs to the peptidase T1A family
Top 10 interactors (score): PRE3 (0.999); PRE2 (0.999); RPN12 (0.999); RPN5 (0.999); RPN10 (0.999); RPN11 (0.999); PUP2 (0.999); BLM10 (0.999); PRE6 (0.999); RPN7 (0.999); UBP6 (0.999); RPN9 (0.999); PRE10 (0.999); RPT6 (0.999); RPN3 (0.999); RPN13 (0.999); PRE8 (0.999); RPT5 (0.999); RPN8 (0.999); PUP1 (0.999)
Homologues (species, bitscore): PSMA4 (Homo sapiens, 275.4); Psma4 (Mus musculus, 275.0); psma4 (Danio rerio, 275.4); psma4 (Xenopus tropicalis, 177.6); Prosalpha3 (Drosophila melanogaster, 259.6); pas-3 (Caenorhabditis elegans, 257.3); PAC1 (Arabidopsis thaliana, 307.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:740370-741146:+ | gene-YGR135W_AKU4011 | rna-NM_001181264.3_AKU4011 | cds-NP_011651.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:19142-19918:+ | gene-YGR135W_BG1 | rna-NM_001181264.3_BG1 | cds-NP_011651.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:743166-743942:+ | gene-YGR135W_Bruggeman | rna-NM_001181264.3_Bruggeman | cds-NP_011651.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:741914-742690:+ | gene-YGR135W_CAT1 | rna-NM_001181264.3_CAT1 | cds-NP_011651.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:741353-742129:+ | gene-YGR135W_CBS1585 | rna-NM_001181264.3_CBS1585 | cds-NP_011651.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:744743-745519:+ | gene-YGR135W_CBS436 | rna-NM_001181264.3_CBS436 | cds-NP_011651.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:733029-733805:+ | gene-YGR135W_CBS6412 | rna-NM_001181264.3_CBS6412 | cds-NP_011651.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:737962-738738:+ | gene-YGR135W_CBS6413 | rna-NM_001181264.3_CBS6413 | cds-NP_011651.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:761104-761880:+ | gene-YGR135W_CENPK1137D | rna-NM_001181264.3_CENPK1137D | cds-NP_011651.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:727394-728170:+ | gene-YGR135W_EthanolRed | rna-NM_001181264.3_EthanolRed | cds-NP_011651.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:731255-732031:+ | gene-YGR135W_FaliES1 | rna-NM_001181264.3_FaliES1 | cds-NP_011651.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000305.1:1814-2590:- | gene-YGR135W_JAY291 | rna-NM_001181264.3_JAY291 | cds-NP_011651.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:850306-851082:+ | gene-YGR135W_MUCL30387 | rna-NM_001181264.3_MUCL30387 | cds-NP_011651.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:743181-743957:+ | gene-YGR135W_MUCL30388 | rna-NM_001181264.3_MUCL30388 | cds-NP_011651.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:737079-737855:+ | gene-YGR135W_MUCL39482 | rna-NM_001181264.3_MUCL39482 | cds-NP_011651.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:747177-747953:+ | gene-YGR135W_MUCL42920 | rna-NM_001181264.3_MUCL42920 | cds-NP_011651.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:761392-762168:+ | gene-YGR135W_NCIM3186 | rna-NM_001181264.3_NCIM3186 | cds-NP_011651.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:731780-732556:+ | gene-YGR135W_NCYC1407 | rna-NM_001181264.3_NCYC1407 | cds-NP_011651.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:751633-752409:+ | gene-YGR135W_PE2H3 | rna-NM_001181264.3_PE2H3 | cds-NP_011651.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:756743-757519:+ | gene-YGR135W_PE2H4 | rna-NM_001181264.3_PE2H4 | cds-NP_011651.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:761392-762168:+ | gene-YGR135W_S288C | rna-NM_001181264.3_S288C | cds-NP_011651.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:182528-183304:+ | gene-YGR135W_SA1 | rna-NM_001181264.3_SA1 | cds-NP_011651.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:751878-752654:+ | gene-YGR135W_ThermosaccDry | rna-NM_001181264.3_ThermosaccDry | cds-NP_011651.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:855380-856156:+ | gene-YGR135W_VR1 | rna-NM_001181264.3_VR1 | cds-NP_011651.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:54024-54800:+ | gene-YGR135W_ZTW1 | rna-NM_001181264.3_ZTW1 | cds-NP_011651.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:741684-742460:+ | gene-YGR135W_Sparadoxus | rna-NM_001181264.3_Sparadoxus | cds-NP_011651.3_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |