Gene name: PRE6
Reference locus (S288C): YOL038W
Gene biotype: protein_coding
Description: Alpha 4 subunit of the 20S proteasome; may replace alpha 3 subunit (Pre9p) under stress conditions to create a more active proteasomal isoform; GFP-fusion protein relocates from cytosol to the mitochondrial surface upon oxidative stress; Belongs to the peptidase T1A family
Top 10 interactors (score): PRE10 (0.999); RPT5 (0.999); SCL1 (0.999); RPN1 (0.999); PRE5 (0.999); RPT2 (0.999); RPN10 (0.999); RPN11 (0.999); PRE9 (0.999); BLM10 (0.999); PUP2 (0.999); UBP6 (0.999); RPN9 (0.999); RPN8 (0.999); PUP1 (0.999); RPN7 (0.999); PRE3 (0.999); RPN12 (0.999); PRE2 (0.999); RPN5 (0.999)
Homologues (species, bitscore): PSMA7 (Homo sapiens, 302.0); Psma7 (Mus musculus, 300.8); psma8 (Danio rerio, 305.8); psma7 (Xenopus tropicalis, 293.9); Prosalpha4 (Drosophila melanogaster, 275.8); pas-4 (Caenorhabditis elegans, 261.5); PAD1 (Arabidopsis thaliana, 300.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:239701-240465:+ | gene-YOL038W_AKU4011 | rna-NM_001183292.1_AKU4011 | cds-NP_014604.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:55319-56083:+ | gene-YOL038W_BG1 | rna-NM_001183292.1_BG1 | cds-NP_014604.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:242554-243318:+ | gene-YOL038W_Bruggeman | rna-NM_001183292.1_Bruggeman | cds-NP_014604.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:240415-241179:+ | gene-YOL038W_CAT1 | rna-NM_001183292.1_CAT1 | cds-NP_014604.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:234371-235135:+ | gene-YOL038W_CBS1585 | rna-NM_001183292.1_CBS1585 | cds-NP_014604.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:238647-239411:+ | gene-YOL038W_CBS436 | rna-NM_001183292.1_CBS436 | cds-NP_014604.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:233735-234499:+ | gene-YOL038W_CBS6412 | rna-NM_001183292.1_CBS6412 | cds-NP_014604.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:241254-242018:+ | gene-YOL038W_CBS6413 | rna-NM_001183292.1_CBS6413 | cds-NP_014604.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:255038-255802:+ | gene-YOL038W_CENPK1137D | rna-NM_001183292.1_CENPK1137D | cds-NP_014604.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:236688-237452:+ | gene-YOL038W_EthanolRed | rna-NM_001183292.1_EthanolRed | cds-NP_014604.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:239604-240368:+ | gene-YOL038W_FaliES1 | rna-NM_001183292.1_FaliES1 | cds-NP_014604.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:26092-26856:- | gene-YOL038W_JAY291 | rna-NM_001183292.1_JAY291 | cds-NP_014604.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:245576-246340:+ | gene-YOL038W_MUCL30387 | rna-NM_001183292.1_MUCL30387 | cds-NP_014604.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:249928-250692:+ | gene-YOL038W_MUCL30388 | rna-NM_001183292.1_MUCL30388 | cds-NP_014604.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:241856-242620:+ | gene-YOL038W_MUCL39482 | rna-NM_001183292.1_MUCL39482 | cds-NP_014604.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:256788-257552:+ | gene-YOL038W_MUCL42920 | rna-NM_001183292.1_MUCL42920 | cds-NP_014604.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:255226-255990:+ | gene-YOL038W_NCIM3186 | rna-NM_001183292.1_NCIM3186 | cds-NP_014604.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:248596-249360:+ | gene-YOL038W_NCYC1407 | rna-NM_001183292.1_NCYC1407 | cds-NP_014604.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:231013-231777:+ | gene-YOL038W_PE2H3 | rna-NM_001183292.1_PE2H3 | cds-NP_014604.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:241987-242751:+ | gene-YOL038W_PE2H4 | rna-NM_001183292.1_PE2H4 | cds-NP_014604.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:255337-256101:+ | gene-YOL038W_S288C | rna-NM_001183292.1_S288C | cds-NP_014604.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:223337-224101:+ | gene-YOL038W_SA1 | rna-NM_001183292.1_SA1 | cds-NP_014604.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:238175-238939:+ | gene-YOL038W_ThermosaccDry | rna-NM_001183292.1_ThermosaccDry | cds-NP_014604.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:238238-239002:+ | gene-YOL038W_VR1 | rna-NM_001183292.1_VR1 | cds-NP_014604.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:238040-238804:+ | gene-YOL038W_ZTW1 | rna-NM_001183292.1_ZTW1 | cds-NP_014604.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:246434-247198:+ | gene-YOL038W_Sparadoxus | rna-NM_001183292.1_Sparadoxus | cds-NP_014604.1_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |