Gene name: PRE4
Reference locus (S288C): YFR050C
Gene biotype: protein_coding
Description: Proteasome core particle subunit beta 7; Beta 7 subunit of the 20S proteasome; Belongs to the peptidase T1B family
Top 10 interactors (score): RPN3 (0.999); RPT6 (0.999); PRE10 (0.999); RPN9 (0.999); PUP1 (0.999); RPN8 (0.999); RPT5 (0.999); RPN7 (0.999); PRE3 (0.999); RPN12 (0.999); PRE2 (0.999); RPN5 (0.999); RPN10 (0.999); RPN11 (0.999); PRE9 (0.999); BLM10 (0.999); PUP2 (0.999); PRE6 (0.999); RPN13 (0.999); PRE8 (0.999)
Homologues (species, bitscore): PSMB4 (Homo sapiens, 198.4); Psmb4 (Mus musculus, 202.6); psmb4 (Danio rerio, 197.2); Prosbeta7 (Drosophila melanogaster, 157.1); pbs-7 (Caenorhabditis elegans, 105.5); PBG1 (Arabidopsis thaliana, 151.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:239213-240013:- | gene-YFR050C_AKU4011 | rna-NM_001180015.1_AKU4011 | cds-NP_116708.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:20993-21793:+ | gene-YFR050C_BG1 | rna-NM_001180015.1_BG1 | cds-NP_116708.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:242868-243668:- | gene-YFR050C_Bruggeman | rna-NM_001180015.1_Bruggeman | cds-NP_116708.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:244842-245642:- | gene-YFR050C_CAT1 | rna-NM_001180015.1_CAT1 | cds-NP_116708.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:240713-241513:- | gene-YFR050C_CBS1585 | rna-NM_001180015.1_CBS1585 | cds-NP_116708.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:213677-214477:- | gene-YFR050C_CBS436 | rna-NM_001180015.1_CBS436 | cds-NP_116708.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:239787-240587:- | gene-YFR050C_CBS6412 | rna-NM_001180015.1_CBS6412 | cds-NP_116708.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:242461-243261:- | gene-YFR050C_CBS6413 | rna-NM_001180015.1_CBS6413 | cds-NP_116708.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:245153-245953:- | gene-YFR050C_CENPK1137D | rna-NM_001180015.1_CENPK1137D | cds-NP_116708.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:238332-239132:- | gene-YFR050C_EthanolRed | rna-NM_001180015.1_EthanolRed | cds-NP_116708.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:239982-240782:- | gene-YFR050C_FaliES1 | rna-NM_001180015.1_FaliES1 | cds-NP_116708.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:43115-43915:- | gene-YFR050C_JAY291 | rna-NM_001180015.1_JAY291 | cds-NP_116708.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:243316-244116:- | gene-YFR050C_MUCL30387 | rna-NM_001180015.1_MUCL30387 | cds-NP_116708.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:238795-239595:- | gene-YFR050C_MUCL30388 | rna-NM_001180015.1_MUCL30388 | cds-NP_116708.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:238635-239435:- | gene-YFR050C_MUCL39482 | rna-NM_001180015.1_MUCL39482 | cds-NP_116708.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:238236-239036:- | gene-YFR050C_MUCL42920 | rna-NM_001180015.1_MUCL42920 | cds-NP_116708.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:249065-249865:- | gene-YFR050C_NCIM3186 | rna-NM_001180015.1_NCIM3186 | cds-NP_116708.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:239485-240285:- | gene-YFR050C_NCYC1407 | rna-NM_001180015.1_NCYC1407 | cds-NP_116708.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:281525-282325:- | gene-YFR050C_PE2H3 | rna-NM_001180015.1_PE2H3 | cds-NP_116708.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:281073-281873:- | gene-YFR050C_PE2H4 | rna-NM_001180015.1_PE2H4 | cds-NP_116708.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:249066-249866:- | gene-YFR050C_S288C | rna-NM_001180015.1_S288C | cds-NP_116708.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000086.1:21236-22036:+ | gene-YFR050C_SA1 | rna-NM_001180015.1_SA1 | cds-NP_116708.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:239151-239951:- | gene-YFR050C_ThermosaccDry | rna-NM_001180015.1_ThermosaccDry | cds-NP_116708.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:254909-255709:- | gene-YFR050C_VR1 | rna-NM_001180015.1_VR1 | cds-NP_116708.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:169597-170397:- | gene-YFR050C_ZTW1 | rna-NM_001180015.1_ZTW1 | cds-NP_116708.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:262633-263436:- | gene-YFR050C_Sparadoxus | rna-NM_001180015.1_Sparadoxus | cds-NP_116708.1_Sparadoxus | 90.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |