Gene name: PRE3
Reference locus (S288C): YJL001W
Gene biotype: protein_coding
Description: Proteasome core particle subunit beta 1; Beta 1 subunit of the 20S proteasome; responsible for cleavage after acidic residues in peptides
Top 10 interactors (score): PUP3 (0.999); PRE1 (0.999); RPT4 (0.999); RPT3 (0.999); PRE4 (0.999); RPN6 (0.999); RPN2 (0.999); RPT1 (0.999); RPT2 (0.999); PRE5 (0.999); RPN1 (0.999); SCL1 (0.999); PRE7 (0.999); PRE8 (0.999); RPN13 (0.999); RPN3 (0.999); RPN9 (0.999); UBP6 (0.999); PRE10 (0.999); RPT6 (0.999)
Homologues (species, bitscore): PSMB6 (Homo sapiens, 238.4); Psmb6 (Mus musculus, 236.1); psmb6 (Danio rerio, 238.0); psmb9 (Xenopus tropicalis, 149.8); Prosbeta1 (Drosophila melanogaster, 221.9); pbs-1 (Caenorhabditis elegans, 180.6); PBA1 (Arabidopsis thaliana, 203.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:418331-419094:+ | gene-YJL001W_AKU4011 | rna-NM_001181435.1_AKU4011 | cds-NP_012533.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:193631-194394:- | gene-YJL001W_BG1 | rna-NM_001181435.1_BG1 | cds-NP_012533.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:432423-433186:+ | gene-YJL001W_Bruggeman | rna-NM_001181435.1_Bruggeman | cds-NP_012533.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:436372-437135:+ | gene-YJL001W_CAT1 | rna-NM_001181435.1_CAT1 | cds-NP_012533.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:429911-430674:+ | gene-YJL001W_CBS1585 | rna-NM_001181435.1_CBS1585 | cds-NP_012533.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:448897-449660:+ | gene-YJL001W_CBS436 | rna-NM_001181435.1_CBS436 | cds-NP_012533.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:418145-418908:+ | gene-YJL001W_CBS6412 | rna-NM_001181435.1_CBS6412 | cds-NP_012533.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:420366-421129:+ | gene-YJL001W_CBS6413 | rna-NM_001181435.1_CBS6413 | cds-NP_012533.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:417652-418415:+ | gene-YJL001W_CENPK1137D | rna-NM_001181435.1_CENPK1137D | cds-NP_012533.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:423299-424062:+ | gene-YJL001W_EthanolRed | rna-NM_001181435.1_EthanolRed | cds-NP_012533.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:434439-435202:+ | gene-YJL001W_FaliES1 | rna-NM_001181435.1_FaliES1 | cds-NP_012533.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000321.1:18030-18793:- | gene-YJL001W_JAY291 | rna-NM_001181435.1_JAY291 | cds-NP_012533.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:432754-433517:+ | gene-YJL001W_MUCL30387 | rna-NM_001181435.1_MUCL30387 | cds-NP_012533.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:429278-430041:+ | gene-YJL001W_MUCL30388 | rna-NM_001181435.1_MUCL30388 | cds-NP_012533.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:423245-424008:+ | gene-YJL001W_MUCL39482 | rna-NM_001181435.1_MUCL39482 | cds-NP_012533.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:428690-429453:+ | gene-YJL001W_MUCL42920 | rna-NM_001181435.1_MUCL42920 | cds-NP_012533.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:435142-435905:+ | gene-YJL001W_NCIM3186 | rna-NM_001181435.1_NCIM3186 | cds-NP_012533.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:421147-421910:+ | gene-YJL001W_NCYC1407 | rna-NM_001181435.1_NCYC1407 | cds-NP_012533.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:439555-440318:+ | gene-YJL001W_PE2H3 | rna-NM_001181435.1_PE2H3 | cds-NP_012533.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:433249-434012:+ | gene-YJL001W_PE2H4 | rna-NM_001181435.1_PE2H4 | cds-NP_012533.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:435163-435926:+ | gene-YJL001W_S288C | rna-NM_001181435.1_S288C | cds-NP_012533.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:231173-231936:+ | gene-YJL001W_SA1 | rna-NM_001181435.1_SA1 | cds-NP_012533.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:428099-428862:+ | gene-YJL001W_ThermosaccDry | rna-NM_001181435.1_ThermosaccDry | cds-NP_012533.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:430474-431237:+ | gene-YJL001W_VR1 | rna-NM_001181435.1_VR1 | cds-NP_012533.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:408110-408873:+ | gene-YJL001W_ZTW1 | rna-NM_001181435.1_ZTW1 | cds-NP_012533.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:432969-433735:+ | gene-YJL001W_Sparadoxus | rna-NM_001181435.1_Sparadoxus | cds-NP_012533.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |