Gene name: PRE1
Reference locus (S288C): YER012W
Gene biotype: protein_coding
Description: Beta 4 subunit of the 20S proteasome; localizes to the nucleus throughout the cell cycle; Belongs to the peptidase T1B family
Top 10 interactors (score): PRE5 (0.999); RPT2 (0.999); RPN1 (0.999); SCL1 (0.999); PUP1 (0.999); PRE6 (0.999); PUP2 (0.999); BLM10 (0.999); PRE9 (0.999); RPN11 (0.999); RPN10 (0.999); RPN5 (0.999); PRE2 (0.999); RPN12 (0.999); PRE3 (0.999); RPN7 (0.999); RPN8 (0.999); RPT5 (0.999); RPN9 (0.999); UBP6 (0.999)
Homologues (species, bitscore): PSMB2 (Homo sapiens, 186.8); Psmb2 (Mus musculus, 186.8); psmb2 (Danio rerio, 191.0); psmb2 (Xenopus tropicalis, 144.4); Prosbeta4 (Drosophila melanogaster, 167.5); pbs-4 (Caenorhabditis elegans, 153.7); PBD1 (Arabidopsis thaliana, 149.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:171880-172476:+ | gene-YER012W_AKU4011 | rna-NM_001178903.1_AKU4011 | cds-NP_010928.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:253623-254219:- | gene-YER012W_BG1 | rna-NM_001178903.1_BG1 | cds-NP_010928.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:179739-180335:+ | gene-YER012W_Bruggeman | rna-NM_001178903.1_Bruggeman | cds-NP_010928.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:174381-174977:+ | gene-YER012W_CAT1 | rna-NM_001178903.1_CAT1 | cds-NP_010928.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:171803-172399:+ | gene-YER012W_CBS1585 | rna-NM_001178903.1_CBS1585 | cds-NP_010928.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:173064-173660:+ | gene-YER012W_CBS436 | rna-NM_001178903.1_CBS436 | cds-NP_010928.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:172047-172643:+ | gene-YER012W_CBS6412 | rna-NM_001178903.1_CBS6412 | cds-NP_010928.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:176833-177429:+ | gene-YER012W_CBS6413 | rna-NM_001178903.1_CBS6413 | cds-NP_010928.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:175697-176293:+ | gene-YER012W_CENPK1137D | rna-NM_001178903.1_CENPK1137D | cds-NP_010928.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:172506-173102:+ | gene-YER012W_EthanolRed | rna-NM_001178903.1_EthanolRed | cds-NP_010928.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:172766-173362:+ | gene-YER012W_FaliES1 | rna-NM_001178903.1_FaliES1 | cds-NP_010928.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:39392-39988:+ | gene-YER012W_JAY291 | rna-NM_001178903.1_JAY291 | cds-NP_010928.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:175932-176528:+ | gene-YER012W_MUCL30387 | rna-NM_001178903.1_MUCL30387 | cds-NP_010928.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:172207-172803:+ | gene-YER012W_MUCL30388 | rna-NM_001178903.1_MUCL30388 | cds-NP_010928.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:170846-171442:+ | gene-YER012W_MUCL39482 | rna-NM_001178903.1_MUCL39482 | cds-NP_010928.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:176963-177559:+ | gene-YER012W_MUCL42920 | rna-NM_001178903.1_MUCL42920 | cds-NP_010928.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:177834-178430:+ | gene-YER012W_NCIM3186 | rna-NM_001178903.1_NCIM3186 | cds-NP_010928.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:175918-176514:+ | gene-YER012W_NCYC1407 | rna-NM_001178903.1_NCYC1407 | cds-NP_010928.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:180219-180815:+ | gene-YER012W_PE2H3 | rna-NM_001178903.1_PE2H3 | cds-NP_010928.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:176134-176730:+ | gene-YER012W_PE2H4 | rna-NM_001178903.1_PE2H4 | cds-NP_010928.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:177835-178431:+ | gene-YER012W_S288C | rna-NM_001178903.1_S288C | cds-NP_010928.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:65239-65835:- | gene-YER012W_SA1 | rna-NM_001178903.1_SA1 | cds-NP_010928.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:173537-174133:+ | gene-YER012W_ThermosaccDry | rna-NM_001178903.1_ThermosaccDry | cds-NP_010928.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:172278-172874:+ | gene-YER012W_VR1 | rna-NM_001178903.1_VR1 | cds-NP_010928.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:170749-171345:+ | gene-YER012W_ZTW1 | rna-NM_001178903.1_ZTW1 | cds-NP_010928.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:175342-175938:+ | gene-YER012W_Sparadoxus | rna-NM_001178903.1_Sparadoxus | cds-NP_010928.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |