Gene name: POP8
Reference locus (S288C): YBL018C
Gene biotype: protein_coding
Description: Ribonucleases P/MRP protein subunit POP8; Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): POP5 (0.999); POP7 (0.999); POP4 (0.999); RPP1 (0.999); POP6 (0.999); POP1 (0.999); POP3 (0.999); RPR2 (0.999); RMP1 (0.998); RPM2 (0.979); SNM1 (0.958); SNU13 (0.909); SEN34 (0.904); NOP58 (0.903); NOP56 (0.903); RRP9 (0.9); LCP5 (0.9); MMS4 (0.9); SEN2 (0.9); NOP1 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:179609-180085:- | gene-YBL018C_AKU4011 | rna-NM_001178258.1_AKU4011 | cds-NP_009535.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:170435-170911:- | gene-YBL018C_BG1 | rna-NM_001178258.1_BG1 | cds-NP_009535.1_BG1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:180195-180671:- | gene-YBL018C_Bruggeman | rna-NM_001178258.1_Bruggeman | cds-NP_009535.1_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:182804-183280:- | gene-YBL018C_CAT1 | rna-NM_001178258.1_CAT1 | cds-NP_009535.1_CAT1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:172164-172640:- | gene-YBL018C_CBS1585 | rna-NM_001178258.1_CBS1585 | cds-NP_009535.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:180617-181093:- | gene-YBL018C_CBS436 | rna-NM_001178258.1_CBS436 | cds-NP_009535.1_CBS436 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:270943-271419:- | gene-YBL018C_CBS6412 | rna-NM_001178258.1_CBS6412 | cds-NP_009535.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:177734-178210:- | gene-YBL018C_CBS6413 | rna-NM_001178258.1_CBS6413 | cds-NP_009535.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:179763-180239:- | gene-YBL018C_CENPK1137D | rna-NM_001178258.1_CENPK1137D | cds-NP_009535.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:307151-307627:- | gene-YBL018C_EthanolRed | rna-NM_001178258.1_EthanolRed | cds-NP_009535.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:194417-194893:- | gene-YBL018C_FaliES1 | rna-NM_001178258.1_FaliES1 | cds-NP_009535.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:20086-20562:- | gene-YBL018C_JAY291 | rna-NM_001178258.1_JAY291 | cds-NP_009535.1_JAY291 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:180052-180528:- | gene-YBL018C_MUCL30387 | rna-NM_001178258.1_MUCL30387 | cds-NP_009535.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:181094-181570:- | gene-YBL018C_MUCL30388 | rna-NM_001178258.1_MUCL30388 | cds-NP_009535.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:172349-172825:- | gene-YBL018C_MUCL39482 | rna-NM_001178258.1_MUCL39482 | cds-NP_009535.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:179624-180100:- | gene-YBL018C_MUCL42920 | rna-NM_001178258.1_MUCL42920 | cds-NP_009535.1_MUCL42920 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:185795-186271:- | gene-YBL018C_NCIM3186 | rna-NM_001178258.1_NCIM3186 | cds-NP_009535.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:173498-173974:- | gene-YBL018C_NCYC1407 | rna-NM_001178258.1_NCYC1407 | cds-NP_009535.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:179723-180199:- | gene-YBL018C_PE2H3 | rna-NM_001178258.1_PE2H3 | cds-NP_009535.1_PE2H3 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:177367-177843:- | gene-YBL018C_PE2H4 | rna-NM_001178258.1_PE2H4 | cds-NP_009535.1_PE2H4 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:185998-186474:- | gene-YBL018C_S288C | rna-NM_001178258.1_S288C | cds-NP_009535.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:70718-71194:- | gene-YBL018C_SA1 | rna-NM_001178258.1_SA1 | cds-NP_009535.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:194372-194848:- | gene-YBL018C_ThermosaccDry | rna-NM_001178258.1_ThermosaccDry | cds-NP_009535.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:176536-177012:- | gene-YBL018C_VR1 | rna-NM_001178258.1_VR1 | cds-NP_009535.1_VR1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:171083-171559:- | gene-YBL018C_ZTW1 | rna-NM_001178258.1_ZTW1 | cds-NP_009535.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:206020-206497:- | gene-YBL018C_Sparadoxus | rna-NM_001178258.1_Sparadoxus | cds-NP_009535.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |