Gene name: POP6
Reference locus (S288C): YGR030C
Gene biotype: protein_coding
Description: Ribonucleases P/MRP protein subunit POP6; Subunit of RNase MRP, nuclear RNase P and telomerase; forms a soluble heterodimer with Pop7p that binds P3 domain of RNase MRP and RNase P RNAs; RNase MRP cleaves pre-rRNA, nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs, while telomerase replenishes telomeric DNA; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): RPP1 (0.999); POP5 (0.999); RMP1 (0.999); RPR2 (0.999); POP4 (0.999); POP1 (0.999); POP7 (0.999); POP8 (0.999); RPM2 (0.979); POP3 (0.979); SNM1 (0.968); SEN15 (0.968); EST1 (0.964); EST3 (0.963); SEN2 (0.959); EST2 (0.954); SNU13 (0.904); NOP56 (0.903); NOP58 (0.903); SEN54 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:541289-541765:- | gene-YGR030C_AKU4011 | rna-NM_001181159.1_AKU4011 | cds-NP_011544.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:34069-34545:+ | gene-YGR030C_BG1 | rna-NM_001181159.1_BG1 | cds-NP_011544.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:543557-544033:- | gene-YGR030C_Bruggeman | rna-NM_001181159.1_Bruggeman | cds-NP_011544.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:541624-542100:- | gene-YGR030C_CAT1 | rna-NM_001181159.1_CAT1 | cds-NP_011544.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:542620-543096:- | gene-YGR030C_CBS1585 | rna-NM_001181159.1_CBS1585 | cds-NP_011544.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:537396-537872:- | gene-YGR030C_CBS436 | rna-NM_001181159.1_CBS436 | cds-NP_011544.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:535378-535854:- | gene-YGR030C_CBS6412 | rna-NM_001181159.1_CBS6412 | cds-NP_011544.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:539464-539940:- | gene-YGR030C_CBS6413 | rna-NM_001181159.1_CBS6413 | cds-NP_011544.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:545522-545998:- | gene-YGR030C_CENPK1137D | rna-NM_001181159.1_CENPK1137D | cds-NP_011544.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:529504-529980:- | gene-YGR030C_EthanolRed | rna-NM_001181159.1_EthanolRed | cds-NP_011544.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:532991-533467:- | gene-YGR030C_FaliES1 | rna-NM_001181159.1_FaliES1 | cds-NP_011544.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:71683-72159:- | gene-YGR030C_JAY291 | rna-NM_001181159.1_JAY291 | cds-NP_011544.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:540191-540667:- | gene-YGR030C_MUCL30387 | rna-NM_001181159.1_MUCL30387 | cds-NP_011544.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:542810-543286:- | gene-YGR030C_MUCL30388 | rna-NM_001181159.1_MUCL30388 | cds-NP_011544.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:538442-538918:- | gene-YGR030C_MUCL39482 | rna-NM_001181159.1_MUCL39482 | cds-NP_011544.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:548225-548701:- | gene-YGR030C_MUCL42920 | rna-NM_001181159.1_MUCL42920 | cds-NP_011544.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:545681-546157:- | gene-YGR030C_NCIM3186 | rna-NM_001181159.1_NCIM3186 | cds-NP_011544.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:532625-533101:- | gene-YGR030C_NCYC1407 | rna-NM_001181159.1_NCYC1407 | cds-NP_011544.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:535505-535981:- | gene-YGR030C_PE2H3 | rna-NM_001181159.1_PE2H3 | cds-NP_011544.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:540612-541088:- | gene-YGR030C_PE2H4 | rna-NM_001181159.1_PE2H4 | cds-NP_011544.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:545681-546157:- | gene-YGR030C_S288C | rna-NM_001181159.1_S288C | cds-NP_011544.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:15759-16235:+ | gene-YGR030C_SA1 | rna-NM_001181159.1_SA1 | cds-NP_011544.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:552328-552804:- | gene-YGR030C_ThermosaccDry | rna-NM_001181159.1_ThermosaccDry | cds-NP_011544.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:642775-643251:- | gene-YGR030C_VR1 | rna-NM_001181159.1_VR1 | cds-NP_011544.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:7811-8287:- | gene-YGR030C_ZTW1 | rna-NM_001181159.1_ZTW1 | cds-NP_011544.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:541892-542368:- | gene-YGR030C_Sparadoxus | rna-NM_001181159.1_Sparadoxus | cds-NP_011544.1_Sparadoxus | 85.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |