Gene name: POP5
Reference locus (S288C): YAL033W
Gene biotype: protein_coding
Description: Ribonuclease P/MRP protein subunit POP5; Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs
Top 10 interactors (score): POP4 (0.999); RMP1 (0.999); POP8 (0.999); POP1 (0.999); RPR2 (0.999); POP7 (0.999); POP3 (0.999); POP6 (0.999); RPP1 (0.999); NHP2 (0.987); SNU13 (0.98); RPM2 (0.979); SNM1 (0.958); MUS81 (0.912); NOP56 (0.911); NOP58 (0.91); NOP1 (0.91); SEN34 (0.909); SEN2 (0.907); RRP9 (0.905)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:67831-68352:+ | gene-YAL033W_AKU4011 | rna-NM_001178178.1_AKU4011 | cds-NP_009369.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:54960-55481:+ | gene-YAL033W_BG1 | rna-NM_001178178.1_BG1 | cds-NP_009369.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:82712-83233:+ | gene-YAL033W_Bruggeman | rna-NM_001178178.1_Bruggeman | cds-NP_009369.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:69058-69579:+ | gene-YAL033W_CAT1 | rna-NM_001178178.1_CAT1 | cds-NP_009369.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:80848-81369:+ | gene-YAL033W_CBS1585 | rna-NM_001178178.1_CBS1585 | cds-NP_009369.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:81099-81620:+ | gene-YAL033W_CBS436 | rna-NM_001178178.1_CBS436 | cds-NP_009369.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:66994-67515:+ | gene-YAL033W_CBS6412 | rna-NM_001178178.1_CBS6412 | cds-NP_009369.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:79113-79634:+ | gene-YAL033W_CBS6413 | rna-NM_001178178.1_CBS6413 | cds-NP_009369.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:82796-83317:+ | gene-YAL033W_CENPK1137D | rna-NM_001178178.1_CENPK1137D | cds-NP_009369.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:69252-69773:+ | gene-YAL033W_EthanolRed | rna-NM_001178178.1_EthanolRed | cds-NP_009369.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:83875-84396:+ | gene-YAL033W_FaliES1 | rna-NM_001178178.1_FaliES1 | cds-NP_009369.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:55150-55671:+ | gene-YAL033W_JAY291 | rna-NM_001178178.1_JAY291 | cds-NP_009369.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:83801-84322:+ | gene-YAL033W_MUCL30387 | rna-NM_001178178.1_MUCL30387 | cds-NP_009369.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:80350-80871:+ | gene-YAL033W_MUCL30388 | rna-NM_001178178.1_MUCL30388 | cds-NP_009369.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:79634-80155:+ | gene-YAL033W_MUCL39482 | rna-NM_001178178.1_MUCL39482 | cds-NP_009369.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:82007-82528:+ | gene-YAL033W_MUCL42920 | rna-NM_001178178.1_MUCL42920 | cds-NP_009369.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:82583-83104:+ | gene-YAL033W_NCIM3186 | rna-NM_001178178.1_NCIM3186 | cds-NP_009369.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:67513-68034:+ | gene-YAL033W_NCYC1407 | rna-NM_001178178.1_NCYC1407 | cds-NP_009369.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:69420-69941:+ | gene-YAL033W_PE2H3 | rna-NM_001178178.1_PE2H3 | cds-NP_009369.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:69139-69660:+ | gene-YAL033W_PE2H4 | rna-NM_001178178.1_PE2H4 | cds-NP_009369.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:82706-83227:+ | gene-YAL033W_S288C | rna-NM_001178178.1_S288C | cds-NP_009369.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:11831-12352:+ | gene-YAL033W_SA1 | rna-NM_001178178.1_SA1 | cds-NP_009369.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:83393-83914:+ | gene-YAL033W_ThermosaccDry | rna-NM_001178178.1_ThermosaccDry | cds-NP_009369.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:84674-85195:+ | gene-YAL033W_VR1 | rna-NM_001178178.1_VR1 | cds-NP_009369.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:55213-55734:+ | gene-YAL033W_ZTW1 | rna-NM_001178178.1_ZTW1 | cds-NP_009369.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:72769-73284:+ | gene-YAL033W_Sparadoxus | rna-NM_001178178.1_Sparadoxus | cds-NP_009369.1_Sparadoxus | 91.5 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |