Gene name: POP4
Reference locus (S288C): YBR257W
Gene biotype: protein_coding
Description: RNases MRP/P 32.9 kDa subunit; Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; binds to the RPR1 RNA subunit in RNase P
Top 10 interactors (score): POP1 (0.999); POP8 (0.999); POP5 (0.999); RMP1 (0.999); RPR2 (0.999); POP7 (0.999); POP6 (0.999); RPP1 (0.999); POP3 (0.999); SNU13 (0.998); SNM1 (0.993); RPM2 (0.98); SEN15 (0.968); SEN34 (0.966); SEN2 (0.961); NOP1 (0.958); RRP9 (0.917); LCP5 (0.917); NOP58 (0.901); MUS81 (0.901)
Homologues (species, bitscore): POP4 (Homo sapiens, 70.1); Pop4 (Mus musculus, 72.4); pop4 (Danio rerio, 74.3); pop4 (Xenopus tropicalis, 75.5); C15C6.4 (Caenorhabditis elegans, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:713167-714006:+ | gene-YBR257W_AKU4011 | rna-NM_001178605.1_AKU4011 | cds-NP_009816.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:84192-85031:+ | gene-YBR257W_BG1 | rna-NM_001178605.1_BG1 | cds-NP_009816.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:714332-715171:+ | gene-YBR257W_Bruggeman | rna-NM_001178605.1_Bruggeman | cds-NP_009816.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:718059-718898:+ | gene-YBR257W_CAT1 | rna-NM_001178605.1_CAT1 | cds-NP_009816.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:704733-705572:+ | gene-YBR257W_CBS1585 | rna-NM_001178605.1_CBS1585 | cds-NP_009816.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:711181-712020:+ | gene-YBR257W_CBS436 | rna-NM_001178605.1_CBS436 | cds-NP_009816.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:799348-800187:+ | gene-YBR257W_CBS6412 | rna-NM_001178605.1_CBS6412 | cds-NP_009816.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:710781-711620:+ | gene-YBR257W_CBS6413 | rna-NM_001178605.1_CBS6413 | cds-NP_009816.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:722793-723632:+ | gene-YBR257W_CENPK1137D | rna-NM_001178605.1_CENPK1137D | cds-NP_009816.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:836204-837043:+ | gene-YBR257W_EthanolRed | rna-NM_001178605.1_EthanolRed | cds-NP_009816.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:729551-730390:+ | gene-YBR257W_FaliES1 | rna-NM_001178605.1_FaliES1 | cds-NP_009816.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:73666-74505:- | gene-YBR257W_JAY291 | rna-NM_001178605.1_JAY291 | cds-NP_009816.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:716375-717214:+ | gene-YBR257W_MUCL30387 | rna-NM_001178605.1_MUCL30387 | cds-NP_009816.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:733458-734297:+ | gene-YBR257W_MUCL30388 | rna-NM_001178605.1_MUCL30388 | cds-NP_009816.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:703040-703879:+ | gene-YBR257W_MUCL39482 | rna-NM_001178605.1_MUCL39482 | cds-NP_009816.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:712913-713752:+ | gene-YBR257W_MUCL42920 | rna-NM_001178605.1_MUCL42920 | cds-NP_009816.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:728682-729521:+ | gene-YBR257W_NCIM3186 | rna-NM_001178605.1_NCIM3186 | cds-NP_009816.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:704929-705768:+ | gene-YBR257W_NCYC1407 | rna-NM_001178605.1_NCYC1407 | cds-NP_009816.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:728061-728900:+ | gene-YBR257W_PE2H3 | rna-NM_001178605.1_PE2H3 | cds-NP_009816.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:725737-726576:+ | gene-YBR257W_PE2H4 | rna-NM_001178605.1_PE2H4 | cds-NP_009816.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:728885-729724:+ | gene-YBR257W_S288C | rna-NM_001178605.1_S288C | cds-NP_009816.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:84012-84851:+ | gene-YBR257W_SA1 | rna-NM_001178605.1_SA1 | cds-NP_009816.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:728543-729382:+ | gene-YBR257W_ThermosaccDry | rna-NM_001178605.1_ThermosaccDry | cds-NP_009816.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:708759-709598:+ | gene-YBR257W_VR1 | rna-NM_001178605.1_VR1 | cds-NP_009816.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:701390-702229:+ | gene-YBR257W_ZTW1 | rna-NM_001178605.1_ZTW1 | cds-NP_009816.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:745297-746136:+ | gene-YBR257W_Sparadoxus | rna-NM_001178605.1_Sparadoxus | cds-NP_009816.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |