Gene name: POP3
Reference locus (S288C): YNL282W
Gene biotype: protein_coding
Description: Ribonucleases P/MRP protein subunit POP3; Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): POP8 (0.999); POP1 (0.999); POP4 (0.999); RPP1 (0.999); POP5 (0.999); RMP1 (0.999); POP7 (0.999); RPR2 (0.989); POP6 (0.979); SNM1 (0.959); LCP5 (0.905); NOP1 (0.902); MMS4 (0.9); SEN15 (0.9); NOP56 (0.9); SEN54 (0.9); NOP58 (0.9); RRP9 (0.9); MUS81 (0.9); SEN34 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:101494-102081:+ | gene-YNL282W_AKU4011 | rna-NM_001183120.1_AKU4011 | cds-NP_014117.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:5366-5953:+ | gene-YNL282W_BG1 | rna-NM_001183120.1_BG1 | cds-NP_014117.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:111282-111869:+ | gene-YNL282W_Bruggeman | rna-NM_001183120.1_Bruggeman | cds-NP_014117.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:114539-115126:+ | gene-YNL282W_CAT1 | rna-NM_001183120.1_CAT1 | cds-NP_014117.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:101884-102471:+ | gene-YNL282W_CBS1585 | rna-NM_001183120.1_CBS1585 | cds-NP_014117.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:96963-97550:+ | gene-YNL282W_CBS436 | rna-NM_001183120.1_CBS436 | cds-NP_014117.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:98304-98891:+ | gene-YNL282W_CBS6412 | rna-NM_001183120.1_CBS6412 | cds-NP_014117.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:98587-99174:+ | gene-YNL282W_CBS6413 | rna-NM_001183120.1_CBS6413 | cds-NP_014117.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:101519-102106:+ | gene-YNL282W_CENPK1137D | rna-NM_001183120.1_CENPK1137D | cds-NP_014117.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:99111-99698:+ | gene-YNL282W_EthanolRed | rna-NM_001183120.1_EthanolRed | cds-NP_014117.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:93848-94435:+ | gene-YNL282W_FaliES1 | rna-NM_001183120.1_FaliES1 | cds-NP_014117.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:5072-5659:+ | gene-YNL282W_JAY291 | rna-NM_001183120.1_JAY291 | cds-NP_014117.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:106331-106918:+ | gene-YNL282W_MUCL30387 | rna-NM_001183120.1_MUCL30387 | cds-NP_014117.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:104884-105471:+ | gene-YNL282W_MUCL30388 | rna-NM_001183120.1_MUCL30388 | cds-NP_014117.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:99374-99961:+ | gene-YNL282W_MUCL39482 | rna-NM_001183120.1_MUCL39482 | cds-NP_014117.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:101624-102211:+ | gene-YNL282W_MUCL42920 | rna-NM_001183120.1_MUCL42920 | cds-NP_014117.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:107656-108243:+ | gene-YNL282W_NCIM3186 | rna-NM_001183120.1_NCIM3186 | cds-NP_014117.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:101241-101828:+ | gene-YNL282W_NCYC1407 | rna-NM_001183120.1_NCYC1407 | cds-NP_014117.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:98408-98995:+ | gene-YNL282W_PE2H3 | rna-NM_001183120.1_PE2H3 | cds-NP_014117.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:97796-98383:+ | gene-YNL282W_PE2H4 | rna-NM_001183120.1_PE2H4 | cds-NP_014117.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:107687-108274:+ | gene-YNL282W_S288C | rna-NM_001183120.1_S288C | cds-NP_014117.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:5139-5726:+ | gene-YNL282W_SA1 | rna-NM_001183120.1_SA1 | cds-NP_014117.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:94705-95292:+ | gene-YNL282W_ThermosaccDry | rna-NM_001183120.1_ThermosaccDry | cds-NP_014117.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:113606-114193:+ | gene-YNL282W_VR1 | rna-NM_001183120.1_VR1 | cds-NP_014117.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:5073-5660:+ | gene-YNL282W_ZTW1 | rna-NM_001183120.1_ZTW1 | cds-NP_014117.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:104978-105565:+ | gene-YNL282W_Sparadoxus | rna-NM_001183120.1_Sparadoxus | cds-NP_014117.1_Sparadoxus | 88.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |