Gene name: POP2
Reference locus (S288C): YNR052C
Gene biotype: protein_coding
Description: Poly(A) ribonuclease POP2; RNase of the DEDD superfamily; subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation
Top 10 interactors (score): NOT3 (0.999); NOT5 (0.999); CDC36 (0.999); CCR4 (0.999); CDC39 (0.999); MOT2 (0.999); CAF40 (0.999); PUF3 (0.997); CAF130 (0.984); NGL1 (0.983); DHH1 (0.981); MPT5 (0.977); DCP1 (0.967); PAN2 (0.953); PAB1 (0.95); CAF4 (0.918); XRN1 (0.907); CAF16 (0.907); EDC3 (0.876); PUF4 (0.875)
Homologues (species, bitscore): CNOT8 (Homo sapiens, 200.3); Cnot8 (Mus musculus, 200.3); cnot8 (Danio rerio, 200.7); cnot8 (Xenopus tropicalis, 183.7); Pop2 (Drosophila melanogaster, 204.5); ccf-1 (Caenorhabditis elegans, 151.0); AT5G10960 (Arabidopsis thaliana, 202.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:230821-232155:+ | gene-YNR052C_AKU4011 | rna-NM_001183229.3_AKU4011 | cds-NP_014450.3_AKU4011 | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:610879-612237:- | gene-YNR052C_BG1 | rna-NM_001183229.3_BG1 | cds-NP_014450.3_BG1 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:720666-721952:- | gene-YNR052C_Bruggeman | rna-NM_001183229.3_Bruggeman | cds-NP_014450.3_Bruggeman | 98.8 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:754630-755988:- | gene-YNR052C_CAT1 | rna-NM_001183229.3_CAT1 | cds-NP_014450.3_CAT1 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:708882-710216:- | gene-YNR052C_CBS1585 | rna-NM_001183229.3_CBS1585 | cds-NP_014450.3_CBS1585 | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:770427-771728:- | gene-YNR052C_CBS436 | rna-NM_001183229.3_CBS436 | cds-NP_014450.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:697860-699194:- | gene-YNR052C_CBS6412 | rna-NM_001183229.3_CBS6412 | cds-NP_014450.3_CBS6412 | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:699545-700879:- | gene-YNR052C_CBS6413 | rna-NM_001183229.3_CBS6413 | cds-NP_014450.3_CBS6413 | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:713085-714371:- | gene-YNR052C_CENPK1137D | rna-NM_001183229.3_CENPK1137D | cds-NP_014450.3_CENPK1137D | 98.8 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:704522-705856:- | gene-YNR052C_EthanolRed | rna-NM_001183229.3_EthanolRed | cds-NP_014450.3_EthanolRed | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:695725-697059:- | gene-YNR052C_FaliES1 | rna-NM_001183229.3_FaliES1 | cds-NP_014450.3_FaliES1 | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:5611-6912:+ | gene-YNR052C_JAY291 | rna-NM_001183229.3_JAY291 | cds-NP_014450.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:718594-719880:- | gene-YNR052C_MUCL30387 | rna-NM_001183229.3_MUCL30387 | cds-NP_014450.3_MUCL30387 | 98.8 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:759652-760938:- | gene-YNR052C_MUCL30388 | rna-NM_001183229.3_MUCL30388 | cds-NP_014450.3_MUCL30388 | 98.7 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:700351-701685:- | gene-YNR052C_MUCL39482 | rna-NM_001183229.3_MUCL39482 | cds-NP_014450.3_MUCL39482 | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:705067-706353:- | gene-YNR052C_MUCL42920 | rna-NM_001183229.3_MUCL42920 | cds-NP_014450.3_MUCL42920 | 98.7 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:719315-720616:- | gene-YNR052C_NCIM3186 | rna-NM_001183229.3_NCIM3186 | cds-NP_014450.3_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:702869-704203:- | gene-YNR052C_NCYC1407 | rna-NM_001183229.3_NCYC1407 | cds-NP_014450.3_NCYC1407 | 94.4 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:703732-705066:- | gene-YNR052C_PE2H3 | rna-NM_001183229.3_PE2H3 | cds-NP_014450.3_PE2H3 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:705134-706468:- | gene-YNR052C_PE2H4 | rna-NM_001183229.3_PE2H4 | cds-NP_014450.3_PE2H4 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:719346-720647:- | gene-YNR052C_S288C | rna-NM_001183229.3_S288C | cds-NP_014450.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000074.1:5677-6978:+ | gene-YNR052C_SA1 | rna-NM_001183229.3_SA1 | cds-NP_014450.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:696062-697396:- | gene-YNR052C_ThermosaccDry | rna-NM_001183229.3_ThermosaccDry | cds-NP_014450.3_ThermosaccDry | 94.5 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:738195-739529:- | gene-YNR052C_VR1 | rna-NM_001183229.3_VR1 | cds-NP_014450.3_VR1 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:605833-607167:- | gene-YNR052C_ZTW1 | rna-NM_001183229.3_ZTW1 | cds-NP_014450.3_ZTW1 | 95.1 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:710323-711633:- | gene-YNR052C_Sparadoxus | rna-NM_001183229.3_Sparadoxus | cds-NP_014450.3_Sparadoxus | 90.9 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |