Gene name: POP1
Reference locus (S288C): YNL221C
Gene biotype: protein_coding
Description: Ribonucleases P/MRP protein subunit POP1; Subunit of RNase MRP, nuclear RNase P and telomerase complexes; RNase MRP cleaves pre-rRNA, nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs, while telomerase replenishes telomeric DNA; binds to the RPR1 RNA subunit in RNase P
Top 10 interactors (score): RMP1 (0.999); POP5 (0.999); POP8 (0.999); POP4 (0.999); RPR2 (0.999); POP7 (0.999); POP6 (0.999); RPP1 (0.999); SNM1 (0.999); POP3 (0.999); SNU13 (0.988); RPM2 (0.979); SEN15 (0.963); SEN34 (0.958); SEN2 (0.955); EST1 (0.951); NOP1 (0.941); EST2 (0.93); EST3 (0.928); LCP5 (0.927)
Homologues (species, bitscore): POP1 (Homo sapiens, 76.3); Pop1 (Mus musculus, 76.3); pop1 (Danio rerio, 61.6); l(1)G0045 (Drosophila melanogaster, 66.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:224849-227476:- | gene-YNL221C_AKU4011 | rna-NM_001183059.1_AKU4011 | cds-NP_014178.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:128792-131419:- | gene-YNL221C_BG1 | rna-NM_001183059.1_BG1 | cds-NP_014178.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:234893-237520:- | gene-YNL221C_Bruggeman | rna-NM_001183059.1_Bruggeman | cds-NP_014178.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:242046-244673:- | gene-YNL221C_CAT1 | rna-NM_001183059.1_CAT1 | cds-NP_014178.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:225244-227871:- | gene-YNL221C_CBS1585 | rna-NM_001183059.1_CBS1585 | cds-NP_014178.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:220324-222951:- | gene-YNL221C_CBS436 | rna-NM_001183059.1_CBS436 | cds-NP_014178.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:221282-223909:- | gene-YNL221C_CBS6412 | rna-NM_001183059.1_CBS6412 | cds-NP_014178.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:221928-224555:- | gene-YNL221C_CBS6413 | rna-NM_001183059.1_CBS6413 | cds-NP_014178.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:224870-227497:- | gene-YNL221C_CENPK1137D | rna-NM_001183059.1_CENPK1137D | cds-NP_014178.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:222484-225111:- | gene-YNL221C_EthanolRed | rna-NM_001183059.1_EthanolRed | cds-NP_014178.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:217226-219853:- | gene-YNL221C_FaliES1 | rna-NM_001183059.1_FaliES1 | cds-NP_014178.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000082.1:128385-131012:- | gene-YNL221C_JAY291 | rna-NM_001183059.1_JAY291 | cds-NP_014178.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:230429-233056:- | gene-YNL221C_MUCL30387 | rna-NM_001183059.1_MUCL30387 | cds-NP_014178.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:229010-231637:- | gene-YNL221C_MUCL30388 | rna-NM_001183059.1_MUCL30388 | cds-NP_014178.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:222734-225361:- | gene-YNL221C_MUCL39482 | rna-NM_001183059.1_MUCL39482 | cds-NP_014178.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:224990-227617:- | gene-YNL221C_MUCL42920 | rna-NM_001183059.1_MUCL42920 | cds-NP_014178.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:231037-233664:- | gene-YNL221C_NCIM3186 | rna-NM_001183059.1_NCIM3186 | cds-NP_014178.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:224824-227451:- | gene-YNL221C_NCYC1407 | rna-NM_001183059.1_NCYC1407 | cds-NP_014178.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:221730-224357:- | gene-YNL221C_PE2H3 | rna-NM_001183059.1_PE2H3 | cds-NP_014178.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:221118-223745:- | gene-YNL221C_PE2H4 | rna-NM_001183059.1_PE2H4 | cds-NP_014178.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:231068-233695:- | gene-YNL221C_S288C | rna-NM_001183059.1_S288C | cds-NP_014178.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000040.1:18615-21242:+ | gene-YNL221C_SA1 | rna-NM_001183059.1_SA1 | cds-NP_014178.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:218082-220709:- | gene-YNL221C_ThermosaccDry | rna-NM_001183059.1_ThermosaccDry | cds-NP_014178.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:237086-239713:- | gene-YNL221C_VR1 | rna-NM_001183059.1_VR1 | cds-NP_014178.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:128413-131040:- | gene-YNL221C_ZTW1 | rna-NM_001183059.1_ZTW1 | cds-NP_014178.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:228499-231126:- | gene-YNL221C_Sparadoxus | rna-NM_001183059.1_Sparadoxus | cds-NP_014178.1_Sparadoxus | 86.8 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |