Gene name: POM34
Reference locus (S288C): YLR018C
Gene biotype: protein_coding
Description: Nucleoporin POM34; Subunit of the transmembrane ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis and spindle pole body duplication
Top 10 interactors (score): POM152 (0.998); NDC1 (0.996); ASM4 (0.989); NUP53 (0.988); NUP188 (0.968); NUP157 (0.96); NUP42 (0.958); NUP170 (0.952); GLE2 (0.945); NUP57 (0.943); NUP159 (0.941); GLE1 (0.927); POM33 (0.926); ECM1 (0.924); NUP133 (0.907); NUP82 (0.899); NUP192 (0.887); NUP2 (0.879); MPS3 (0.861); MLP2 (0.843)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:166643-167542:- | gene-YLR018C_AKU4011 | rna-NM_001181905.1_AKU4011 | cds-NP_013118.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:129917-130816:- | gene-YLR018C_BG1 | rna-NM_001181905.1_BG1 | cds-NP_013118.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:177043-177942:- | gene-YLR018C_Bruggeman | rna-NM_001181905.1_Bruggeman | cds-NP_013118.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:177363-178262:- | gene-YLR018C_CAT1 | rna-NM_001181905.1_CAT1 | cds-NP_013118.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:174271-175170:- | gene-YLR018C_CBS1585 | rna-NM_001181905.1_CBS1585 | cds-NP_013118.1_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:164904-165803:- | gene-YLR018C_CBS436 | rna-NM_001181905.1_CBS436 | cds-NP_013118.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:172679-173578:- | gene-YLR018C_CBS6412 | rna-NM_001181905.1_CBS6412 | cds-NP_013118.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:174532-175431:- | gene-YLR018C_CBS6413 | rna-NM_001181905.1_CBS6413 | cds-NP_013118.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:163957-164856:- | gene-YLR018C_CENPK1137D | rna-NM_001181905.1_CENPK1137D | cds-NP_013118.1_CENPK1137D | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:166656-167555:- | gene-YLR018C_EthanolRed | rna-NM_001181905.1_EthanolRed | cds-NP_013118.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:166227-167126:- | gene-YLR018C_FaliES1 | rna-NM_001181905.1_FaliES1 | cds-NP_013118.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:10422-11321:- | gene-YLR018C_JAY291 | rna-NM_001181905.1_JAY291 | cds-NP_013118.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:174390-175289:- | gene-YLR018C_MUCL30387 | rna-NM_001181905.1_MUCL30387 | cds-NP_013118.1_MUCL30387 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:180369-181268:- | gene-YLR018C_MUCL30388 | rna-NM_001181905.1_MUCL30388 | cds-NP_013118.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:174766-175665:- | gene-YLR018C_MUCL39482 | rna-NM_001181905.1_MUCL39482 | cds-NP_013118.1_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:174669-175568:- | gene-YLR018C_MUCL42920 | rna-NM_001181905.1_MUCL42920 | cds-NP_013118.1_MUCL42920 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:178681-179580:- | gene-YLR018C_NCIM3186 | rna-NM_001181905.1_NCIM3186 | cds-NP_013118.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:166386-167285:- | gene-YLR018C_NCYC1407 | rna-NM_001181905.1_NCYC1407 | cds-NP_013118.1_NCYC1407 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:172700-173599:- | gene-YLR018C_PE2H3 | rna-NM_001181905.1_PE2H3 | cds-NP_013118.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:172441-173340:- | gene-YLR018C_PE2H4 | rna-NM_001181905.1_PE2H4 | cds-NP_013118.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:178707-179606:- | gene-YLR018C_S288C | rna-NM_001181905.1_S288C | cds-NP_013118.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:10557-11456:- | gene-YLR018C_SA1 | rna-NM_001181905.1_SA1 | cds-NP_013118.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:166730-167629:- | gene-YLR018C_ThermosaccDry | rna-NM_001181905.1_ThermosaccDry | cds-NP_013118.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:180151-181050:- | gene-YLR018C_VR1 | rna-NM_001181905.1_VR1 | cds-NP_013118.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:166096-166995:- | gene-YLR018C_ZTW1 | rna-NM_001181905.1_ZTW1 | cds-NP_013118.1_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:174893-175792:- | gene-YLR018C_Sparadoxus | rna-NM_001181905.1_Sparadoxus | cds-NP_013118.1_Sparadoxus | 88.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |