Gene name: POM33
Reference locus (S288C): YLL023C
Gene biotype: protein_coding
Description: Pore membrane protein of 33 kDa; Transmembrane nucleoporin; involved in nuclear pore complex (NPC) distribution, assembly or stabilization; highly conserved across species, orthologous to human TMEM33 and paralogous to Per33p; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RTN1 (0.967); POM152 (0.952); SEY1 (0.948); YOP1 (0.939); POM34 (0.926); NUP133 (0.888); NUP159 (0.824); BRR6 (0.822); ASM4 (0.813); NUP53 (0.787); NUP188 (0.781); TYS1 (0.78); GLE2 (0.77); SEC13 (0.768); HEH2 (0.765); NUP120 (0.755); NUP42 (0.746); NUP157 (0.745); RTN2 (0.735); NUP2 (0.731)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:85405-86244:- | gene-YLL023C_AKU4011 | rna-NM_001181843.1_AKU4011 | cds-NP_013077.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:49105-49944:- | gene-YLL023C_BG1 | rna-NM_001181843.1_BG1 | cds-NP_013077.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:95410-96249:- | gene-YLL023C_Bruggeman | rna-NM_001181843.1_Bruggeman | cds-NP_013077.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:96027-96866:- | gene-YLL023C_CAT1 | rna-NM_001181843.1_CAT1 | cds-NP_013077.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:93104-93943:- | gene-YLL023C_CBS1585 | rna-NM_001181843.1_CBS1585 | cds-NP_013077.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:83553-84392:- | gene-YLL023C_CBS436 | rna-NM_001181843.1_CBS436 | cds-NP_013077.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:91793-92632:- | gene-YLL023C_CBS6412 | rna-NM_001181843.1_CBS6412 | cds-NP_013077.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:93363-94202:- | gene-YLL023C_CBS6413 | rna-NM_001181843.1_CBS6413 | cds-NP_013077.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:83021-83860:- | gene-YLL023C_CENPK1137D | rna-NM_001181843.1_CENPK1137D | cds-NP_013077.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:85544-86383:- | gene-YLL023C_EthanolRed | rna-NM_001181843.1_EthanolRed | cds-NP_013077.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:85115-85954:- | gene-YLL023C_FaliES1 | rna-NM_001181843.1_FaliES1 | cds-NP_013077.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:69327-70166:+ | gene-YLL023C_JAY291 | rna-NM_001181843.1_JAY291 | cds-NP_013077.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:93322-94161:- | gene-YLL023C_MUCL30387 | rna-NM_001181843.1_MUCL30387 | cds-NP_013077.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:97552-98391:- | gene-YLL023C_MUCL30388 | rna-NM_001181843.1_MUCL30388 | cds-NP_013077.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:93562-94401:- | gene-YLL023C_MUCL39482 | rna-NM_001181843.1_MUCL39482 | cds-NP_013077.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:93160-93999:- | gene-YLL023C_MUCL42920 | rna-NM_001181843.1_MUCL42920 | cds-NP_013077.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:97971-98810:- | gene-YLL023C_NCIM3186 | rna-NM_001181843.1_NCIM3186 | cds-NP_013077.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:85180-86019:- | gene-YLL023C_NCYC1407 | rna-NM_001181843.1_NCYC1407 | cds-NP_013077.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:91616-92455:- | gene-YLL023C_PE2H3 | rna-NM_001181843.1_PE2H3 | cds-NP_013077.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:91426-92265:- | gene-YLL023C_PE2H4 | rna-NM_001181843.1_PE2H4 | cds-NP_013077.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:97997-98836:- | gene-YLL023C_S288C | rna-NM_001181843.1_S288C | cds-NP_013077.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:676-1515:- | gene-YLL023C_SA1 | rna-NM_001181843.1_SA1 | cds-NP_013077.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:85621-86460:- | gene-YLL023C_ThermosaccDry | rna-NM_001181843.1_ThermosaccDry | cds-NP_013077.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:99434-100273:- | gene-YLL023C_VR1 | rna-NM_001181843.1_VR1 | cds-NP_013077.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:84941-85780:- | gene-YLL023C_ZTW1 | rna-NM_001181843.1_ZTW1 | cds-NP_013077.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:93433-94272:- | gene-YLL023C_Sparadoxus | rna-NM_001181843.1_Sparadoxus | cds-NP_013077.1_Sparadoxus | 91.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |