Gene name: POL30
Reference locus (S288C): YBR088C
Gene biotype: protein_coding
Description: Proliferating cell nuclear antigen (PCNA); functions as the sliding replication clamp for DNA polymerase delta; may function as a docking site for other proteins required for mitotic and meiotic chromosomal DNA replication and for DNA repair; PCNA ubiquitination at K164 plays a crucial role during Okazaki fragment processing
Top 10 interactors (score): POL3 (0.999); RFC3 (0.999); UBC9 (0.999); ELG1 (0.999); MSH6 (0.999); POL31 (0.999); RFC2 (0.999); RFA1 (0.999); RFC5 (0.999); RAD27 (0.999); MSH2 (0.999); RFC1 (0.999); CDC9 (0.999); RAD30 (0.999); RAD18 (0.999); RFC4 (0.999); CAC2 (0.999); SRS2 (0.998); SMT3 (0.998); POL1 (0.998)
Homologues (species, bitscore): PCNA (Homo sapiens, 200.7); Pcna-ps2 (Mus musculus, 201.4); pcna (Danio rerio, 190.3); pcna (Xenopus tropicalis, 193.0); PCNA (Drosophila melanogaster, 209.1); pcn-1 (Caenorhabditis elegans, 204.5); PCNA1 (Arabidopsis thaliana, 224.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:407358-408134:- | gene-YBR088C_AKU4011 | rna-NM_001178436.1_AKU4011 | cds-NP_009645.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:398395-399171:- | gene-YBR088C_BG1 | rna-NM_001178436.1_BG1 | cds-NP_009645.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:408933-409709:- | gene-YBR088C_Bruggeman | rna-NM_001178436.1_Bruggeman | cds-NP_009645.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:411906-412682:- | gene-YBR088C_CAT1 | rna-NM_001178436.1_CAT1 | cds-NP_009645.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:399643-400419:- | gene-YBR088C_CBS1585 | rna-NM_001178436.1_CBS1585 | cds-NP_009645.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:407764-408540:- | gene-YBR088C_CBS436 | rna-NM_001178436.1_CBS436 | cds-NP_009645.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:497872-498648:- | gene-YBR088C_CBS6412 | rna-NM_001178436.1_CBS6412 | cds-NP_009645.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:404783-405559:- | gene-YBR088C_CBS6413 | rna-NM_001178436.1_CBS6413 | cds-NP_009645.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:418742-419518:- | gene-YBR088C_CENPK1137D | rna-NM_001178436.1_CENPK1137D | cds-NP_009645.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:534150-534926:- | gene-YBR088C_EthanolRed | rna-NM_001178436.1_EthanolRed | cds-NP_009645.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:423433-424209:- | gene-YBR088C_FaliES1 | rna-NM_001178436.1_FaliES1 | cds-NP_009645.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000013.1:2972-3748:+ | gene-YBR088C_JAY291 | rna-NM_001178436.1_JAY291 | cds-NP_009645.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:411170-411946:- | gene-YBR088C_MUCL30387 | rna-NM_001178436.1_MUCL30387 | cds-NP_009645.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:410165-410941:- | gene-YBR088C_MUCL30388 | rna-NM_001178436.1_MUCL30388 | cds-NP_009645.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:399634-400410:- | gene-YBR088C_MUCL39482 | rna-NM_001178436.1_MUCL39482 | cds-NP_009645.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:406847-407623:- | gene-YBR088C_MUCL42920 | rna-NM_001178436.1_MUCL42920 | cds-NP_009645.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:424787-425563:- | gene-YBR088C_NCIM3186 | rna-NM_001178436.1_NCIM3186 | cds-NP_009645.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:400566-401342:- | gene-YBR088C_NCYC1407 | rna-NM_001178436.1_NCYC1407 | cds-NP_009645.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:413182-413958:- | gene-YBR088C_PE2H3 | rna-NM_001178436.1_PE2H3 | cds-NP_009645.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:410858-411634:- | gene-YBR088C_PE2H4 | rna-NM_001178436.1_PE2H4 | cds-NP_009645.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:424990-425766:- | gene-YBR088C_S288C | rna-NM_001178436.1_S288C | cds-NP_009645.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:51939-52715:+ | gene-YBR088C_SA1 | rna-NM_001178436.1_SA1 | cds-NP_009645.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:422440-423216:- | gene-YBR088C_ThermosaccDry | rna-NM_001178436.1_ThermosaccDry | cds-NP_009645.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:404444-405220:- | gene-YBR088C_VR1 | rna-NM_001178436.1_VR1 | cds-NP_009645.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:398105-398881:- | gene-YBR088C_ZTW1 | rna-NM_001178436.1_ZTW1 | cds-NP_009645.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:434958-435734:- | gene-YBR088C_Sparadoxus | rna-NM_001178436.1_Sparadoxus | cds-NP_009645.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |