Gene name: POB3
Reference locus (S288C): YML069W
Gene biotype: protein_coding
Description: Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; protein abundance increases in response to DNA replication stress; Belongs to the SSRP1 family
Top 10 interactors (score): RTF1 (0.999); MCM2 (0.999); CKB2 (0.999); SPT16 (0.999); HHF1 (0.999); CHD1 (0.999); LEO1 (0.999); SPT6 (0.999); HTA1 (0.998); MCM4 (0.998); HHF2 (0.998); HHT1 (0.997); CKB1 (0.997); HHT2 (0.997); HTA2 (0.996); MCM7 (0.996); HTB1 (0.995); PAF1 (0.995); MCM5 (0.995); CTR9 (0.994)
Homologues (species, bitscore): SSRP1 (Homo sapiens, 292.4); Ssrp1 (Mus musculus, 290.8); ssrp1a (Danio rerio, 309.7); ssrp1 (Xenopus tropicalis, 270.4); Ssrp (Drosophila melanogaster, 254.2); hmg-4 (Caenorhabditis elegans, 236.9); HMG (Arabidopsis thaliana, 255.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:129235-130893:+ | gene-YML069W_AKU4011 | rna-NM_001182428.1_AKU4011 | cds-NP_013642.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:345246-346904:- | gene-YML069W_BG1 | rna-NM_001182428.1_BG1 | cds-NP_013642.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:135377-137035:+ | gene-YML069W_Bruggeman | rna-NM_001182428.1_Bruggeman | cds-NP_013642.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:137051-138709:+ | gene-YML069W_CAT1 | rna-NM_001182428.1_CAT1 | cds-NP_013642.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:129244-130902:+ | gene-YML069W_CBS1585 | rna-NM_001182428.1_CBS1585 | cds-NP_013642.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:135145-136803:+ | gene-YML069W_CBS436 | rna-NM_001182428.1_CBS436 | cds-NP_013642.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:129952-131610:+ | gene-YML069W_CBS6412 | rna-NM_001182428.1_CBS6412 | cds-NP_013642.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:128427-130085:+ | gene-YML069W_CBS6413 | rna-NM_001182428.1_CBS6413 | cds-NP_013642.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:130223-131881:+ | gene-YML069W_CENPK1137D | rna-NM_001182428.1_CENPK1137D | cds-NP_013642.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:129508-131166:+ | gene-YML069W_EthanolRed | rna-NM_001182428.1_EthanolRed | cds-NP_013642.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:130015-131673:+ | gene-YML069W_FaliES1 | rna-NM_001182428.1_FaliES1 | cds-NP_013642.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:25435-27093:- | gene-YML069W_JAY291 | rna-NM_001182428.1_JAY291 | cds-NP_013642.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:133907-135565:+ | gene-YML069W_MUCL30387 | rna-NM_001182428.1_MUCL30387 | cds-NP_013642.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:137082-138740:+ | gene-YML069W_MUCL30388 | rna-NM_001182428.1_MUCL30388 | cds-NP_013642.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:129255-130913:+ | gene-YML069W_MUCL39482 | rna-NM_001182428.1_MUCL39482 | cds-NP_013642.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:135088-136746:+ | gene-YML069W_MUCL42920 | rna-NM_001182428.1_MUCL42920 | cds-NP_013642.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:135454-137112:+ | gene-YML069W_NCIM3186 | rna-NM_001182428.1_NCIM3186 | cds-NP_013642.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:130050-131708:+ | gene-YML069W_NCYC1407 | rna-NM_001182428.1_NCYC1407 | cds-NP_013642.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:135459-137117:+ | gene-YML069W_PE2H3 | rna-NM_001182428.1_PE2H3 | cds-NP_013642.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:135323-136981:+ | gene-YML069W_PE2H4 | rna-NM_001182428.1_PE2H4 | cds-NP_013642.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:135500-137158:+ | gene-YML069W_S288C | rna-NM_001182428.1_S288C | cds-NP_013642.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:47103-48761:- | gene-YML069W_SA1 | rna-NM_001182428.1_SA1 | cds-NP_013642.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:129307-130965:+ | gene-YML069W_ThermosaccDry | rna-NM_001182428.1_ThermosaccDry | cds-NP_013642.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:133671-135329:+ | gene-YML069W_VR1 | rna-NM_001182428.1_VR1 | cds-NP_013642.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:108844-110502:+ | gene-YML069W_ZTW1 | rna-NM_001182428.1_ZTW1 | cds-NP_013642.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:140416-142074:+ | gene-YML069W_Sparadoxus | rna-NM_001182428.1_Sparadoxus | cds-NP_013642.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |