Gene name: PNS1
Reference locus (S288C): YOR161C
Gene biotype: protein_coding
Description: Protein pns1; Protein of unknown function; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport
Top 10 interactors (score): VMA6 (0.907); TIP1 (0.811); RTC3 (0.794); SOL4 (0.794); DCS2 (0.786); ESA1 (0.758); MDN1 (0.754); ALF1 (0.747); MED4 (0.705); YRR1 (0.697); SWT1 (0.677); LAA1 (0.66); DDP1 (0.66); CST26 (0.642); CTT1 (0.635); ARP5 (0.619); YLR001C (0.618); GET4 (0.613); SEY1 (0.598); GLN4 (0.59)
Homologues (species, bitscore): SLC44A5 (Homo sapiens, 81.3); Slc44a5 (Mus musculus, 77.8); slc44a5a (Danio rerio, 79.0); slc44a2 (Xenopus tropicalis, 72.4); CG11880 (Drosophila melanogaster, 50.4); chtl-1 (Caenorhabditis elegans, 77.8); AT1G25500 (Arabidopsis thaliana, 81.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:634576-636195:- | gene-YOR161C_AKU4011 | rna-NM_001183580.3_AKU4011 | cds-NP_014804.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:36332-37951:- | gene-YOR161C_BG1 | rna-NM_001183580.3_BG1 | cds-NP_014804.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:618649-620268:- | gene-YOR161C_Bruggeman | rna-NM_001183580.3_Bruggeman | cds-NP_014804.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:618667-620286:- | gene-YOR161C_CAT1 | rna-NM_001183580.3_CAT1 | cds-NP_014804.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:617071-618690:- | gene-YOR161C_CBS1585 | rna-NM_001183580.3_CBS1585 | cds-NP_014804.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:615365-616984:- | gene-YOR161C_CBS436 | rna-NM_001183580.3_CBS436 | cds-NP_014804.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:614683-616302:- | gene-YOR161C_CBS6412 | rna-NM_001183580.3_CBS6412 | cds-NP_014804.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:623364-624983:- | gene-YOR161C_CBS6413 | rna-NM_001183580.3_CBS6413 | cds-NP_014804.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:636698-638317:- | gene-YOR161C_CENPK1137D | rna-NM_001183580.3_CENPK1137D | cds-NP_014804.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:610778-612397:- | gene-YOR161C_EthanolRed | rna-NM_001183580.3_EthanolRed | cds-NP_014804.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:615631-617250:- | gene-YOR161C_FaliES1 | rna-NM_001183580.3_FaliES1 | cds-NP_014804.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:26288-27907:+ | gene-YOR161C_JAY291 | rna-NM_001183580.3_JAY291 | cds-NP_014804.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:623456-625075:- | gene-YOR161C_MUCL30387 | rna-NM_001183580.3_MUCL30387 | cds-NP_014804.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:630219-631838:- | gene-YOR161C_MUCL30388 | rna-NM_001183580.3_MUCL30388 | cds-NP_014804.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:624912-626531:- | gene-YOR161C_MUCL39482 | rna-NM_001183580.3_MUCL39482 | cds-NP_014804.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:634333-635952:- | gene-YOR161C_MUCL42920 | rna-NM_001183580.3_MUCL42920 | cds-NP_014804.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:636828-638447:- | gene-YOR161C_NCIM3186 | rna-NM_001183580.3_NCIM3186 | cds-NP_014804.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:624998-626617:- | gene-YOR161C_NCYC1407 | rna-NM_001183580.3_NCYC1407 | cds-NP_014804.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:623509-625128:- | gene-YOR161C_PE2H3 | rna-NM_001183580.3_PE2H3 | cds-NP_014804.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:633886-635505:- | gene-YOR161C_PE2H4 | rna-NM_001183580.3_PE2H4 | cds-NP_014804.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:636939-638558:- | gene-YOR161C_S288C | rna-NM_001183580.3_S288C | cds-NP_014804.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:53495-55114:- | gene-YOR161C_SA1 | rna-NM_001183580.3_SA1 | cds-NP_014804.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:614814-616433:- | gene-YOR161C_ThermosaccDry | rna-NM_001183580.3_ThermosaccDry | cds-NP_014804.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:678512-680131:- | gene-YOR161C_VR1 | rna-NM_001183580.3_VR1 | cds-NP_014804.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:348265-349884:- | gene-YOR161C_ZTW1 | rna-NM_001183580.3_ZTW1 | cds-NP_014804.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:619945-621564:- | gene-YOR161C_Sparadoxus | rna-NM_001183580.3_Sparadoxus | cds-NP_014804.3_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |