Gene name: PNO1
Reference locus (S288C): YOR145C
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein PNO1; Essential nucleolar protein required for pre-18S rRNA processing; interacts with Dim1p, an 18S rRNA dimethyltransferase, and also with Nob1p, which is involved in proteasome biogenesis; contains a KH domain
Top 10 interactors (score): NOP56 (0.999); ROK1 (0.999); UTP15 (0.999); PWP2 (0.999); UTP30 (0.999); ENP2 (0.999); NOP7 (0.999); DBP8 (0.999); HAS1 (0.999); RRP12 (0.999); TSR1 (0.999); NOP1 (0.999); UTP18 (0.999); IMP4 (0.999); RCL1 (0.999); LTV1 (0.999); NOP58 (0.999); UTP13 (0.999); RIO2 (0.999); IMP3 (0.999)
Homologues (species, bitscore): PNO1 (Homo sapiens, 248.4); Pno1 (Mus musculus, 248.4); pno1 (Danio rerio, 253.1); pno1 (Xenopus tropicalis, 258.1); l(1)G0004 (Drosophila melanogaster, 256.1); Y53C12B.2 (Caenorhabditis elegans, 229.9); AT3G13230 (Arabidopsis thaliana, 238.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:602882-603706:- | gene-YOR145C_AKU4011 | rna-NM_001183564.1_AKU4011 | cds-NP_014788.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:4729-5553:- | gene-YOR145C_BG1 | rna-NM_001183564.1_BG1 | cds-NP_014788.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:587046-587870:- | gene-YOR145C_Bruggeman | rna-NM_001183564.1_Bruggeman | cds-NP_014788.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:587064-587888:- | gene-YOR145C_CAT1 | rna-NM_001183564.1_CAT1 | cds-NP_014788.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:585357-586181:- | gene-YOR145C_CBS1585 | rna-NM_001183564.1_CBS1585 | cds-NP_014788.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:583770-584594:- | gene-YOR145C_CBS436 | rna-NM_001183564.1_CBS436 | cds-NP_014788.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:582995-583819:- | gene-YOR145C_CBS6412 | rna-NM_001183564.1_CBS6412 | cds-NP_014788.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:591765-592589:- | gene-YOR145C_CBS6413 | rna-NM_001183564.1_CBS6413 | cds-NP_014788.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:605103-605927:- | gene-YOR145C_CENPK1137D | rna-NM_001183564.1_CENPK1137D | cds-NP_014788.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:579194-580018:- | gene-YOR145C_EthanolRed | rna-NM_001183564.1_EthanolRed | cds-NP_014788.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:584047-584871:- | gene-YOR145C_FaliES1 | rna-NM_001183564.1_FaliES1 | cds-NP_014788.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:58678-59502:+ | gene-YOR145C_JAY291 | rna-NM_001183564.1_JAY291 | cds-NP_014788.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:591851-592675:- | gene-YOR145C_MUCL30387 | rna-NM_001183564.1_MUCL30387 | cds-NP_014788.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:598609-599433:- | gene-YOR145C_MUCL30388 | rna-NM_001183564.1_MUCL30388 | cds-NP_014788.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:593279-594103:- | gene-YOR145C_MUCL39482 | rna-NM_001183564.1_MUCL39482 | cds-NP_014788.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:602735-603559:- | gene-YOR145C_MUCL42920 | rna-NM_001183564.1_MUCL42920 | cds-NP_014788.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:605236-606060:- | gene-YOR145C_NCIM3186 | rna-NM_001183564.1_NCIM3186 | cds-NP_014788.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:593402-594226:- | gene-YOR145C_NCYC1407 | rna-NM_001183564.1_NCYC1407 | cds-NP_014788.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:591909-592733:- | gene-YOR145C_PE2H3 | rna-NM_001183564.1_PE2H3 | cds-NP_014788.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:602286-603110:- | gene-YOR145C_PE2H4 | rna-NM_001183564.1_PE2H4 | cds-NP_014788.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:605347-606171:- | gene-YOR145C_S288C | rna-NM_001183564.1_S288C | cds-NP_014788.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:21895-22719:- | gene-YOR145C_SA1 | rna-NM_001183564.1_SA1 | cds-NP_014788.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:583230-584054:- | gene-YOR145C_ThermosaccDry | rna-NM_001183564.1_ThermosaccDry | cds-NP_014788.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:646909-647733:- | gene-YOR145C_VR1 | rna-NM_001183564.1_VR1 | cds-NP_014788.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:316677-317501:- | gene-YOR145C_ZTW1 | rna-NM_001183564.1_ZTW1 | cds-NP_014788.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:588309-589133:- | gene-YOR145C_Sparadoxus | rna-NM_001183564.1_Sparadoxus | cds-NP_014788.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |