Gene name: PMS1
Reference locus (S288C): YNL082W
Gene biotype: protein_coding
Description: ATP-binding protein required for mismatch repair; required for both mitosis and meiosis; functions as a heterodimer with Mlh1p; binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL
Top 10 interactors (score): MLH1 (0.999); MSH3 (0.999); MSH6 (0.999); MSH2 (0.999); EXO1 (0.996); POL3 (0.977); RAD10 (0.965); RAD14 (0.963); POL2 (0.951); MSH5 (0.943); MSH4 (0.94); POL30 (0.94); RAD2 (0.936); MLH3 (0.906); MSH1 (0.892); RAD1 (0.89); RAD3 (0.858); CDC9 (0.849); RAD27 (0.845); RAD51 (0.843)
Homologues (species, bitscore): PMS2 (Homo sapiens, 459.9); Pms2 (Mus musculus, 465.7); pms2 (Danio rerio, 461.1); pms2 (Xenopus tropicalis, 468.8); Pms2 (Drosophila melanogaster, 442.6); pms-2 (Caenorhabditis elegans, 413.3); PMS1 (Arabidopsis thaliana, 418.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:467036-469669:+ | gene-YNL082W_AKU4011 | rna-NM_001182920.3_AKU4011 | cds-NP_014317.4_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:371121-373742:+ | gene-YNL082W_BG1 | rna-NM_001182920.3_BG1 | cds-NP_014317.4_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:477757-480390:+ | gene-YNL082W_Bruggeman | rna-NM_001182920.3_Bruggeman | cds-NP_014317.4_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:520782-523403:+ | gene-YNL082W_CAT1 | rna-NM_001182920.3_CAT1 | cds-NP_014317.4_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:467706-470339:+ | gene-YNL082W_CBS1585 | rna-NM_001182920.3_CBS1585 | cds-NP_014317.4_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:536097-538718:+ | gene-YNL082W_CBS436 | rna-NM_001182920.3_CBS436 | cds-NP_014317.4_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:462802-465435:+ | gene-YNL082W_CBS6412 | rna-NM_001182920.3_CBS6412 | cds-NP_014317.4_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:464118-466751:+ | gene-YNL082W_CBS6413 | rna-NM_001182920.3_CBS6413 | cds-NP_014317.4_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:467214-469835:+ | gene-YNL082W_CENPK1137D | rna-NM_001182920.3_CENPK1137D | cds-NP_014317.4_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:469862-472495:+ | gene-YNL082W_EthanolRed | rna-NM_001182920.3_EthanolRed | cds-NP_014317.4_EthanolRed | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:460391-463024:+ | gene-YNL082W_FaliES1 | rna-NM_001182920.3_FaliES1 | cds-NP_014317.4_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000317.1:10574-13207:- | gene-YNL082W_JAY291 | rna-NM_001182920.3_JAY291 | cds-NP_014317.4_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:473934-476567:+ | gene-YNL082W_MUCL30387 | rna-NM_001182920.3_MUCL30387 | cds-NP_014317.4_MUCL30387 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:509306-511939:+ | gene-YNL082W_MUCL30388 | rna-NM_001182920.3_MUCL30388 | cds-NP_014317.4_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:465110-467743:+ | gene-YNL082W_MUCL39482 | rna-NM_001182920.3_MUCL39482 | cds-NP_014317.4_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:469049-471670:+ | gene-YNL082W_MUCL42920 | rna-NM_001182920.3_MUCL42920 | cds-NP_014317.4_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:473360-475981:+ | gene-YNL082W_NCIM3186 | rna-NM_001182920.3_NCIM3186 | cds-NP_014317.4_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:467158-469791:+ | gene-YNL082W_NCYC1407 | rna-NM_001182920.3_NCYC1407 | cds-NP_014317.4_NCYC1407 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:470397-473030:+ | gene-YNL082W_PE2H3 | rna-NM_001182920.3_PE2H3 | cds-NP_014317.4_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:465472-468105:+ | gene-YNL082W_PE2H4 | rna-NM_001182920.3_PE2H4 | cds-NP_014317.4_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:473391-476012:+ | gene-YNL082W_S288C | rna-NM_001182920.3_S288C | cds-NP_014317.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:58334-60967:+ | gene-YNL082W_SA1 | rna-NM_001182920.3_SA1 | cds-NP_014317.4_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:461266-463899:+ | gene-YNL082W_ThermosaccDry | rna-NM_001182920.3_ThermosaccDry | cds-NP_014317.4_ThermosaccDry | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:480379-483012:+ | gene-YNL082W_VR1 | rna-NM_001182920.3_VR1 | cds-NP_014317.4_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:370615-373248:+ | gene-YNL082W_ZTW1 | rna-NM_001182920.3_ZTW1 | cds-NP_014317.4_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:476766-479408:+ | gene-YNL082W_Sparadoxus | rna-NM_001182920.3_Sparadoxus | cds-NP_014317.4_Sparadoxus | 86.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |