Gene name: PML39
Reference locus (S288C): YML107C
Gene biotype: protein_coding
Description: Pre-mRNA leakage protein 39; Protein required for nuclear retention of unspliced pre-mRNAs; required along with Mlp1p and Pml1p; anchored to nuclear pore complex via Mlp1p and Mlp2p; found with the subset of nuclear pores farthest from the nucleolus; may interact with ribosomes
Top 10 interactors (score): AAT2 (0.874); CST6 (0.872); PPR1 (0.872); TFC7 (0.872); URA1 (0.872); SIR3 (0.872); URA5 (0.872); URA4 (0.872); URA2 (0.872); LCD1 (0.858); PML1 (0.85); ESA1 (0.846); NUP60 (0.841); TFC1 (0.823); ESC1 (0.817); MLP2 (0.812); SRB6 (0.772); YNG2 (0.759); MON2 (0.759); MLP1 (0.747)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:48987-49991:- | gene-YML107C_AKU4011 | rna-NM_001182469.1_AKU4011 | cds-NP_013600.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:426132-427136:+ | gene-YML107C_BG1 | rna-NM_001182469.1_BG1 | cds-NP_013600.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:55247-56251:- | gene-YML107C_Bruggeman | rna-NM_001182469.1_Bruggeman | cds-NP_013600.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:56802-57806:- | gene-YML107C_CAT1 | rna-NM_001182469.1_CAT1 | cds-NP_013600.2_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:48988-49992:- | gene-YML107C_CBS1585 | rna-NM_001182469.1_CBS1585 | cds-NP_013600.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:54985-55989:- | gene-YML107C_CBS436 | rna-NM_001182469.1_CBS436 | cds-NP_013600.2_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:49751-50755:- | gene-YML107C_CBS6412 | rna-NM_001182469.1_CBS6412 | cds-NP_013600.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:48215-49219:- | gene-YML107C_CBS6413 | rna-NM_001182469.1_CBS6413 | cds-NP_013600.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:49863-50867:- | gene-YML107C_CENPK1137D | rna-NM_001182469.1_CENPK1137D | cds-NP_013600.2_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:49497-50501:- | gene-YML107C_EthanolRed | rna-NM_001182469.1_EthanolRed | cds-NP_013600.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:49773-50777:- | gene-YML107C_FaliES1 | rna-NM_001182469.1_FaliES1 | cds-NP_013600.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:39403-40407:+ | gene-YML107C_JAY291 | rna-NM_001182469.1_JAY291 | cds-NP_013600.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:53697-54701:- | gene-YML107C_MUCL30387 | rna-NM_001182469.1_MUCL30387 | cds-NP_013600.2_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:56917-57921:- | gene-YML107C_MUCL30388 | rna-NM_001182469.1_MUCL30388 | cds-NP_013600.2_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:49003-50007:- | gene-YML107C_MUCL39482 | rna-NM_001182469.1_MUCL39482 | cds-NP_013600.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:53161-54165:- | gene-YML107C_MUCL42920 | rna-NM_001182469.1_MUCL42920 | cds-NP_013600.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:55219-56223:- | gene-YML107C_NCIM3186 | rna-NM_001182469.1_NCIM3186 | cds-NP_013600.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:49797-50801:- | gene-YML107C_NCYC1407 | rna-NM_001182469.1_NCYC1407 | cds-NP_013600.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:55236-56240:- | gene-YML107C_PE2H3 | rna-NM_001182469.1_PE2H3 | cds-NP_013600.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:55174-56178:- | gene-YML107C_PE2H4 | rna-NM_001182469.1_PE2H4 | cds-NP_013600.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:55265-56269:- | gene-YML107C_S288C | rna-NM_001182469.1_S288C | cds-NP_013600.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:47251-48255:- | gene-YML107C_SA1 | rna-NM_001182469.1_SA1 | cds-NP_013600.2_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:49071-50075:- | gene-YML107C_ThermosaccDry | rna-NM_001182469.1_ThermosaccDry | cds-NP_013600.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:53456-54460:- | gene-YML107C_VR1 | rna-NM_001182469.1_VR1 | cds-NP_013600.2_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:28557-29561:- | gene-YML107C_ZTW1 | rna-NM_001182469.1_ZTW1 | cds-NP_013600.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:60007-61011:- | gene-YML107C_Sparadoxus | rna-NM_001182469.1_Sparadoxus | cds-NP_013600.2_Sparadoxus | 86.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |