Gene name: PML1
Reference locus (S288C): YLR016C
Gene biotype: protein_coding
Description: Pre-mRNA leakage protein 1; Subunit of the RES complex; RES complex is required for nuclear retention of unspliced pre-mRNAs; acts in the same pathway as Pml39p and Mlp1p
Top 10 interactors (score): IST3 (0.999); BUD13 (0.999); HUB1 (0.999); HSH155 (0.998); PRP45 (0.998); CLF1 (0.997); ECM2 (0.995); CWC21 (0.995); CEF1 (0.992); CDC40 (0.992); PRP11 (0.986); CWC22 (0.986); PRP2 (0.986); PRP9 (0.985); CUS1 (0.985); HSH49 (0.983); PRP46 (0.983); RDS3 (0.983); SYF1 (0.982); RSE1 (0.98)
Homologues (species, bitscore): SNIP1 (Homo sapiens, 62.4); Snip1 (Mus musculus, 63.2); snip1 (Danio rerio, 59.7); snip1 (Xenopus tropicalis, 55.5); CG17168 (Drosophila melanogaster, 63.9); C32E8.5 (Caenorhabditis elegans, 62.8); DDL (Arabidopsis thaliana, 59.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:164737-165351:- | gene-YLR016C_AKU4011 | rna-NM_001181903.1_AKU4011 | cds-NP_013116.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:128012-128626:- | gene-YLR016C_BG1 | rna-NM_001181903.1_BG1 | cds-NP_013116.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:175138-175752:- | gene-YLR016C_Bruggeman | rna-NM_001181903.1_Bruggeman | cds-NP_013116.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:175458-176072:- | gene-YLR016C_CAT1 | rna-NM_001181903.1_CAT1 | cds-NP_013116.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:172365-172979:- | gene-YLR016C_CBS1585 | rna-NM_001181903.1_CBS1585 | cds-NP_013116.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:162999-163613:- | gene-YLR016C_CBS436 | rna-NM_001181903.1_CBS436 | cds-NP_013116.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:170772-171386:- | gene-YLR016C_CBS6412 | rna-NM_001181903.1_CBS6412 | cds-NP_013116.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:172626-173240:- | gene-YLR016C_CBS6413 | rna-NM_001181903.1_CBS6413 | cds-NP_013116.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:162052-162666:- | gene-YLR016C_CENPK1137D | rna-NM_001181903.1_CENPK1137D | cds-NP_013116.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:164750-165364:- | gene-YLR016C_EthanolRed | rna-NM_001181903.1_EthanolRed | cds-NP_013116.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:164321-164935:- | gene-YLR016C_FaliES1 | rna-NM_001181903.1_FaliES1 | cds-NP_013116.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000431.1:8517-9131:- | gene-YLR016C_JAY291 | rna-NM_001181903.1_JAY291 | cds-NP_013116.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:172485-173099:- | gene-YLR016C_MUCL30387 | rna-NM_001181903.1_MUCL30387 | cds-NP_013116.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:178464-179078:- | gene-YLR016C_MUCL30388 | rna-NM_001181903.1_MUCL30388 | cds-NP_013116.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:172860-173474:- | gene-YLR016C_MUCL39482 | rna-NM_001181903.1_MUCL39482 | cds-NP_013116.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:172763-173377:- | gene-YLR016C_MUCL42920 | rna-NM_001181903.1_MUCL42920 | cds-NP_013116.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:176776-177390:- | gene-YLR016C_NCIM3186 | rna-NM_001181903.1_NCIM3186 | cds-NP_013116.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:164480-165094:- | gene-YLR016C_NCYC1407 | rna-NM_001181903.1_NCYC1407 | cds-NP_013116.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:170795-171409:- | gene-YLR016C_PE2H3 | rna-NM_001181903.1_PE2H3 | cds-NP_013116.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:170536-171150:- | gene-YLR016C_PE2H4 | rna-NM_001181903.1_PE2H4 | cds-NP_013116.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:176802-177416:- | gene-YLR016C_S288C | rna-NM_001181903.1_S288C | cds-NP_013116.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:8652-9266:- | gene-YLR016C_SA1 | rna-NM_001181903.1_SA1 | cds-NP_013116.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:164824-165438:- | gene-YLR016C_ThermosaccDry | rna-NM_001181903.1_ThermosaccDry | cds-NP_013116.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:178246-178860:- | gene-YLR016C_VR1 | rna-NM_001181903.1_VR1 | cds-NP_013116.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:164190-164804:- | gene-YLR016C_ZTW1 | rna-NM_001181903.1_ZTW1 | cds-NP_013116.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:172987-173601:- | gene-YLR016C_Sparadoxus | rna-NM_001181903.1_Sparadoxus | cds-NP_013116.1_Sparadoxus | 89.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |