Gene name: PMD1
Reference locus (S288C): YER132C
Gene biotype: protein_coding
Description: Protein with an N-terminal kelch-like domain; putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions; PMD1 has a paralog, MDS3, that arose from the whole genome duplication
Top 10 interactors (score): WHI4 (0.752); SAP1 (0.733); UBP13 (0.712); SEN2 (0.711); FAR8 (0.697); MFB1 (0.691); SMK1 (0.664); BUD14 (0.64); MDS3 (0.624); YLR326W (0.617); PSP2 (0.617); CDC25 (0.615); MSB1 (0.595); YSP2 (0.582); FUS3 (0.576); RAS1 (0.569); RAS2 (0.569); CDC48 (0.569); CUE5 (0.544); ARP2 (0.544)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:419023-424284:- | gene-YER132C_AKU4011 | rna-NM_001179022.3_AKU4011 | cds-NP_011058.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:1374-6635:+ | gene-YER132C_BG1 | rna-NM_001179022.3_BG1 | cds-NP_011058.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:429488-434749:- | gene-YER132C_Bruggeman | rna-NM_001179022.3_Bruggeman | cds-NP_011058.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:424727-429988:- | gene-YER132C_CAT1 | rna-NM_001179022.3_CAT1 | cds-NP_011058.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:418418-423679:- | gene-YER132C_CBS1585 | rna-NM_001179022.3_CBS1585 | cds-NP_011058.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:421161-426422:- | gene-YER132C_CBS436 | rna-NM_001179022.3_CBS436 | cds-NP_011058.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:417496-422757:- | gene-YER132C_CBS6412 | rna-NM_001179022.3_CBS6412 | cds-NP_011058.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:424339-429600:- | gene-YER132C_CBS6413 | rna-NM_001179022.3_CBS6413 | cds-NP_011058.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:422907-428168:- | gene-YER132C_CENPK1137D | rna-NM_001179022.3_CENPK1137D | cds-NP_011058.3_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:418866-424127:- | gene-YER132C_EthanolRed | rna-NM_001179022.3_EthanolRed | cds-NP_011058.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:419347-424608:- | gene-YER132C_FaliES1 | rna-NM_001179022.3_FaliES1 | cds-NP_011058.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000028.1:27608-32868:- | gene-YER132C_JAY291 | rna-NM_001179022.3_JAY291 | cds-NP_011058.3_JAY291 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:426436-431697:- | gene-YER132C_MUCL30387 | rna-NM_001179022.3_MUCL30387 | cds-NP_011058.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:421383-426644:- | gene-YER132C_MUCL30388 | rna-NM_001179022.3_MUCL30388 | cds-NP_011058.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:417443-422704:- | gene-YER132C_MUCL39482 | rna-NM_001179022.3_MUCL39482 | cds-NP_011058.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:425929-431190:- | gene-YER132C_MUCL42920 | rna-NM_001179022.3_MUCL42920 | cds-NP_011058.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:425187-430448:- | gene-YER132C_NCIM3186 | rna-NM_001179022.3_NCIM3186 | cds-NP_011058.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:422976-428237:- | gene-YER132C_NCYC1407 | rna-NM_001179022.3_NCYC1407 | cds-NP_011058.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:433559-438820:- | gene-YER132C_PE2H3 | rna-NM_001179022.3_PE2H3 | cds-NP_011058.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:423500-428761:- | gene-YER132C_PE2H4 | rna-NM_001179022.3_PE2H4 | cds-NP_011058.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:425188-430449:- | gene-YER132C_S288C | rna-NM_001179022.3_S288C | cds-NP_011058.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:134743-140004:- | gene-YER132C_SA1 | rna-NM_001179022.3_SA1 | cds-NP_011058.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:420145-425406:- | gene-YER132C_ThermosaccDry | rna-NM_001179022.3_ThermosaccDry | cds-NP_011058.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:421193-426454:- | gene-YER132C_VR1 | rna-NM_001179022.3_VR1 | cds-NP_011058.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:417272-422533:- | gene-YER132C_ZTW1 | rna-NM_001179022.3_ZTW1 | cds-NP_011058.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:421209-426470:- | gene-YER132C_Sparadoxus | rna-NM_001179022.3_Sparadoxus | cds-NP_011058.3_Sparadoxus | 88.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |