Gene name: PMC1
Reference locus (S288C): YGL006W
Gene biotype: protein_coding
Description: Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium; similar to mammalian PMCA1a; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family
Top 10 interactors (score): PMR1 (0.999); VCX1 (0.998); CCH1 (0.983); CNB1 (0.966); YVC1 (0.963); CMD1 (0.962); NYV1 (0.94); CRZ1 (0.919); PBY1 (0.907); MID1 (0.852); RCN1 (0.85); CMP2 (0.845); NCP1 (0.843); CNA1 (0.823); GDT1 (0.797); VNX1 (0.796); CMK2 (0.785); ECM7 (0.745); RCN2 (0.739); GSC2 (0.735)
Homologues (species, bitscore): ATP2B1 (Homo sapiens, 553.5); Atp2b2 (Mus musculus, 559.7); atp2b4 (Danio rerio, 567.0); atp2b4 (Xenopus tropicalis, 553.5); PMCA (Drosophila melanogaster, 551.2); mca-3 (Caenorhabditis elegans, 575.1); ACA9 (Arabidopsis thaliana, 583.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:487972-491493:+ | gene-YGL006W_AKU4011 | rna-NM_001180871.1_AKU4011 | cds-NP_011509.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:84617-88138:- | gene-YGL006W_BG1 | rna-NM_001180871.1_BG1 | cds-NP_011509.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:488941-492462:+ | gene-YGL006W_Bruggeman | rna-NM_001180871.1_Bruggeman | cds-NP_011509.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:487484-491005:+ | gene-YGL006W_CAT1 | rna-NM_001180871.1_CAT1 | cds-NP_011509.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:489445-492966:+ | gene-YGL006W_CBS1585 | rna-NM_001180871.1_CBS1585 | cds-NP_011509.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:483827-487348:+ | gene-YGL006W_CBS436 | rna-NM_001180871.1_CBS436 | cds-NP_011509.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:482061-485582:+ | gene-YGL006W_CBS6412 | rna-NM_001180871.1_CBS6412 | cds-NP_011509.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:486116-489637:+ | gene-YGL006W_CBS6413 | rna-NM_001180871.1_CBS6413 | cds-NP_011509.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:485738-489259:+ | gene-YGL006W_CENPK1137D | rna-NM_001180871.1_CENPK1137D | cds-NP_011509.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:476343-479864:+ | gene-YGL006W_EthanolRed | rna-NM_001180871.1_EthanolRed | cds-NP_011509.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:479595-483116:+ | gene-YGL006W_FaliES1 | rna-NM_001180871.1_FaliES1 | cds-NP_011509.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:18226-21746:+ | gene-YGL006W_JAY291 | rna-NM_001180871.1_JAY291 | cds-NP_011509.1_JAY291 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:486163-489684:+ | gene-YGL006W_MUCL30387 | rna-NM_001180871.1_MUCL30387 | cds-NP_011509.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:488714-492235:+ | gene-YGL006W_MUCL30388 | rna-NM_001180871.1_MUCL30388 | cds-NP_011509.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:485284-488805:+ | gene-YGL006W_MUCL39482 | rna-NM_001180871.1_MUCL39482 | cds-NP_011509.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:494716-498236:+ | gene-YGL006W_MUCL42920 | rna-NM_001180871.1_MUCL42920 | cds-NP_011509.1_MUCL42920 | 99.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:485921-489442:+ | gene-YGL006W_NCIM3186 | rna-NM_001180871.1_NCIM3186 | cds-NP_011509.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:479304-482825:+ | gene-YGL006W_NCYC1407 | rna-NM_001180871.1_NCYC1407 | cds-NP_011509.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:481994-485515:+ | gene-YGL006W_PE2H3 | rna-NM_001180871.1_PE2H3 | cds-NP_011509.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:487044-490565:+ | gene-YGL006W_PE2H4 | rna-NM_001180871.1_PE2H4 | cds-NP_011509.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:485921-489442:+ | gene-YGL006W_S288C | rna-NM_001180871.1_S288C | cds-NP_011509.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:66140-69661:- | gene-YGL006W_SA1 | rna-NM_001180871.1_SA1 | cds-NP_011509.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:498920-502441:+ | gene-YGL006W_ThermosaccDry | rna-NM_001180871.1_ThermosaccDry | cds-NP_011509.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:588956-592477:+ | gene-YGL006W_VR1 | rna-NM_001180871.1_VR1 | cds-NP_011509.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:477519-481040:+ | gene-YGL006W_ZTW1 | rna-NM_001180871.1_ZTW1 | cds-NP_011509.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:487107-490631:+ | gene-YGL006W_Sparadoxus | rna-NM_001180871.1_Sparadoxus | cds-NP_011509.1_Sparadoxus | 89.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |