Gene name: PKR1
Reference locus (S288C): YMR123W
Gene biotype: protein_coding
Description: V-ATPase assembly factor; functions with other V-ATPase assembly factors in the ER to efficiently assemble the V-ATPase membrane sector (V0); protein abundance increases in response to DNA replication stress
Top 10 interactors (score): TPK1 (0.901); VMA21 (0.893); TPK2 (0.81); GPA1 (0.764); CFT1 (0.756); RLF2 (0.749); CFT2 (0.745); CIR1 (0.744); CYR1 (0.718); STP22 (0.683); LAC1 (0.678); ARL1 (0.607); SYS1 (0.604); RGD1 (0.582); SET6 (0.573); GYP1 (0.571); ARL3 (0.571); CNB1 (0.568); ACA1 (0.562); RCR1 (0.561)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:553100-553468:+ | gene-YMR123W_AKU4011 | rna-NM_001182624.1_AKU4011 | cds-NP_013842.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:119064-119432:- | gene-YMR123W_BG1 | rna-NM_001182624.1_BG1 | cds-NP_013842.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:496271-496639:+ | gene-YMR123W_Bruggeman | rna-NM_001182624.1_Bruggeman | cds-NP_013842.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:498488-498856:+ | gene-YMR123W_CAT1 | rna-NM_001182624.1_CAT1 | cds-NP_013842.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:486023-486391:+ | gene-YMR123W_CBS1585 | rna-NM_001182624.1_CBS1585 | cds-NP_013842.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:489889-490257:+ | gene-YMR123W_CBS436 | rna-NM_001182624.1_CBS436 | cds-NP_013842.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:599016-599384:+ | gene-YMR123W_CBS6412 | rna-NM_001182624.1_CBS6412 | cds-NP_013842.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:484583-484951:+ | gene-YMR123W_CBS6413 | rna-NM_001182624.1_CBS6413 | cds-NP_013842.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:508121-508489:+ | gene-YMR123W_CENPK1137D | rna-NM_001182624.1_CENPK1137D | cds-NP_013842.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:484213-484581:+ | gene-YMR123W_EthanolRed | rna-NM_001182624.1_EthanolRed | cds-NP_013842.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:490127-490495:+ | gene-YMR123W_FaliES1 | rna-NM_001182624.1_FaliES1 | cds-NP_013842.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:36467-36835:- | gene-YMR123W_JAY291 | rna-NM_001182624.1_JAY291 | cds-NP_013842.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:490996-491364:+ | gene-YMR123W_MUCL30387 | rna-NM_001182624.1_MUCL30387 | cds-NP_013842.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:496522-496890:+ | gene-YMR123W_MUCL30388 | rna-NM_001182624.1_MUCL30388 | cds-NP_013842.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:486724-487092:+ | gene-YMR123W_MUCL39482 | rna-NM_001182624.1_MUCL39482 | cds-NP_013842.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:493009-493377:+ | gene-YMR123W_MUCL42920 | rna-NM_001182624.1_MUCL42920 | cds-NP_013842.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:513547-513915:+ | gene-YMR123W_NCIM3186 | rna-NM_001182624.1_NCIM3186 | cds-NP_013842.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:486362-486730:+ | gene-YMR123W_NCYC1407 | rna-NM_001182624.1_NCYC1407 | cds-NP_013842.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:496799-497167:+ | gene-YMR123W_PE2H3 | rna-NM_001182624.1_PE2H3 | cds-NP_013842.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:497253-497621:+ | gene-YMR123W_PE2H4 | rna-NM_001182624.1_PE2H4 | cds-NP_013842.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:513593-513961:+ | gene-YMR123W_S288C | rna-NM_001182624.1_S288C | cds-NP_013842.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:57302-57670:- | gene-YMR123W_SA1 | rna-NM_001182624.1_SA1 | cds-NP_013842.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:486611-486979:+ | gene-YMR123W_ThermosaccDry | rna-NM_001182624.1_ThermosaccDry | cds-NP_013842.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:499306-499674:+ | gene-YMR123W_VR1 | rna-NM_001182624.1_VR1 | cds-NP_013842.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:461739-462107:+ | gene-YMR123W_ZTW1 | rna-NM_001182624.1_ZTW1 | cds-NP_013842.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:498078-498446:+ | gene-YMR123W_Sparadoxus | rna-NM_001182624.1_Sparadoxus | cds-NP_013842.1_Sparadoxus | 88.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |