Gene name: PIR3
Reference locus (S288C): YKL163W
Gene biotype: protein_coding
Description: O-glycosylated covalently-bound cell wall protein; required for cell wall stability; expression is cell cycle regulated, peaking in M/G1 and also subject to regulation by the cell integrity pathway; coding sequence contains length polymorphisms in different strains; PIR3 has a paralog, HSP150, that arose from the whole genome duplication
Top 10 interactors (score): PST1 (0.91); CWP1 (0.749); CRH1 (0.745); NCW2 (0.735); YNL046W (0.706); SED1 (0.7); YKR015C (0.697); SCW4 (0.69); CRG1 (0.659); CCW14 (0.636); CIS3 (0.635); KRE9 (0.632); KIN3 (0.61); YPS3 (0.609); RLM1 (0.59); YNR066C (0.568); KDX1 (0.542); TIR1 (0.522); PRM5 (0.499); YBR285W (0.497)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:131239-132270:+ | gene-YKL163W_AKU4011 | rna-NM_001179729.1_AKU4011 | cds-NP_012758.1_AKU4011 | 93.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:107865-108842:+ | gene-YKL163W_BG1 | rna-NM_001179729.1_BG1 | cds-NP_012758.1_BG1 | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:148647-149927:+ | gene-YKL163W_Bruggeman | rna-NM_001179729.1_Bruggeman | cds-NP_012758.1_Bruggeman | 75.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:143603-144742:+ | gene-YKL163W_CAT1 | rna-NM_001179729.1_CAT1 | cds-NP_012758.1_CAT1 | 84.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:143300-144493:+ | gene-YKL163W_CBS1585 | rna-NM_001179729.1_CBS1585 | cds-NP_012758.1_CBS1585 | 81.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:141999-143084:+ | gene-YKL163W_CBS436 | rna-NM_001179729.1_CBS436 | cds-NP_012758.1_CBS436 | 88.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:128703-129518:+ | gene-YKL163W_CBS6412 | rna-NM_001179729.1_CBS6412 | cds-NP_012758.1_CBS6412 | 83.1 | 83.4 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:143825-144964:+ | gene-YKL163W_CBS6413 | rna-NM_001179729.1_CBS6413 | cds-NP_012758.1_CBS6413 | 85.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:144048-145025:+ | gene-YKL163W_CENPK1137D | rna-NM_001179729.1_CENPK1137D | cds-NP_012758.1_CENPK1137D | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:142094-143017:+ | gene-YKL163W_EthanolRed | rna-NM_001179729.1_EthanolRed | cds-NP_012758.1_EthanolRed | 94.4 | 94.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:142852-143829:+ | gene-YKL163W_FaliES1 | rna-NM_001179729.1_FaliES1 | cds-NP_012758.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000239.2:1653-2792:+ | gene-YKL163W_JAY291 | rna-NM_001179729.1_JAY291 | cds-NP_012758.1_JAY291 | 84.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:150994-152025:+ | gene-YKL163W_MUCL30387 | rna-NM_001179729.1_MUCL30387 | cds-NP_012758.1_MUCL30387 | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:145348-146379:+ | gene-YKL163W_MUCL30388 | rna-NM_001179729.1_MUCL30388 | cds-NP_012758.1_MUCL30388 | 93.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:143164-144303:+ | gene-YKL163W_MUCL39482 | rna-NM_001179729.1_MUCL39482 | cds-NP_012758.1_MUCL39482 | 85.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:147623-148708:+ | gene-YKL163W_MUCL42920 | rna-NM_001179729.1_MUCL42920 | cds-NP_012758.1_MUCL42920 | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:144390-145367:+ | gene-YKL163W_NCIM3186 | rna-NM_001179729.1_NCIM3186 | cds-NP_012758.1_NCIM3186 | 97.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:143302-144495:+ | gene-YKL163W_NCYC1407 | rna-NM_001179729.1_NCYC1407 | cds-NP_012758.1_NCYC1407 | 81.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:150431-151570:+ | gene-YKL163W_PE2H3 | rna-NM_001179729.1_PE2H3 | cds-NP_012758.1_PE2H3 | 84.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:146725-147864:+ | gene-YKL163W_PE2H4 | rna-NM_001179729.1_PE2H4 | cds-NP_012758.1_PE2H4 | 84.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:144401-145378:+ | gene-YKL163W_S288C | rna-NM_001179729.1_S288C | cds-NP_012758.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:60655-61794:+ | gene-YKL163W_SA1 | rna-NM_001179729.1_SA1 | cds-NP_012758.1_SA1 | 84.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:143552-144529:+ | gene-YKL163W_ThermosaccDry | rna-NM_001179729.1_ThermosaccDry | cds-NP_012758.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:142077-143362:+ | gene-YKL163W_VR1 | rna-NM_001179729.1_VR1 | cds-NP_012758.1_VR1 | 75.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:142161-143138:+ | gene-YKL163W_ZTW1 | rna-NM_001179729.1_ZTW1 | cds-NP_012758.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:157705-159060:+ | gene-YKL163W_Sparadoxus | rna-NM_001179729.1_Sparadoxus | cds-NP_012758.1_Sparadoxus | 66.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |