Gene name: PIN4
Reference locus (S288C): YBL051C
Gene biotype: protein_coding
Description: RNA-binding protein PIN4; Protein involved in G2/M phase progression and response to DNA damage; interacts with Rad53p; contains an RNA recognition motif, a nuclear localization signal, and several SQ/TQ cluster domains; hyperphosphorylated in response to DNA damage
Top 10 interactors (score): RNA14 (0.909); CFT2 (0.814); PIN2 (0.813); CFT1 (0.81); YTH1 (0.799); NEW1 (0.766); PIN3 (0.764); MSL1 (0.7); SIS1 (0.692); YLL032C (0.691); LSM4 (0.689); YSH1 (0.68); SYC1 (0.68); RAD53 (0.68); SWI1 (0.675); PAP1 (0.67); RVB2 (0.668); TIF1 (0.654); SGN1 (0.649); ESL1 (0.648)
Homologues (species, bitscore): CSTF2 (Homo sapiens, 50.4); Cstf2 (Mus musculus, 50.4); cstf2 (Danio rerio, 52.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:116342-118348:- | gene-YBL051C_AKU4011 | rna-NM_001178291.1_AKU4011 | cds-NP_009502.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:107183-109189:- | gene-YBL051C_BG1 | rna-NM_001178291.1_BG1 | cds-NP_009502.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:116948-118954:- | gene-YBL051C_Bruggeman | rna-NM_001178291.1_Bruggeman | cds-NP_009502.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:119582-121588:- | gene-YBL051C_CAT1 | rna-NM_001178291.1_CAT1 | cds-NP_009502.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:108901-110907:- | gene-YBL051C_CBS1585 | rna-NM_001178291.1_CBS1585 | cds-NP_009502.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:117407-119413:- | gene-YBL051C_CBS436 | rna-NM_001178291.1_CBS436 | cds-NP_009502.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:107047-109053:- | gene-YBL051C_CBS6412 | rna-NM_001178291.1_CBS6412 | cds-NP_009502.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:114478-116484:- | gene-YBL051C_CBS6413 | rna-NM_001178291.1_CBS6413 | cds-NP_009502.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:116515-118521:- | gene-YBL051C_CENPK1137D | rna-NM_001178291.1_CENPK1137D | cds-NP_009502.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:130332-132338:- | gene-YBL051C_EthanolRed | rna-NM_001178291.1_EthanolRed | cds-NP_009502.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:131185-133191:- | gene-YBL051C_FaliES1 | rna-NM_001178291.1_FaliES1 | cds-NP_009502.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:33802-35808:- | gene-YBL051C_JAY291 | rna-NM_001178291.1_JAY291 | cds-NP_009502.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:116323-118329:- | gene-YBL051C_MUCL30387 | rna-NM_001178291.1_MUCL30387 | cds-NP_009502.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:117598-119604:- | gene-YBL051C_MUCL30388 | rna-NM_001178291.1_MUCL30388 | cds-NP_009502.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:109081-111087:- | gene-YBL051C_MUCL39482 | rna-NM_001178291.1_MUCL39482 | cds-NP_009502.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:115915-117921:- | gene-YBL051C_MUCL42920 | rna-NM_001178291.1_MUCL42920 | cds-NP_009502.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:122550-124556:- | gene-YBL051C_NCIM3186 | rna-NM_001178291.1_NCIM3186 | cds-NP_009502.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:110228-112234:- | gene-YBL051C_NCYC1407 | rna-NM_001178291.1_NCYC1407 | cds-NP_009502.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:116479-118485:- | gene-YBL051C_PE2H3 | rna-NM_001178291.1_PE2H3 | cds-NP_009502.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:114123-116129:- | gene-YBL051C_PE2H4 | rna-NM_001178291.1_PE2H4 | cds-NP_009502.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:122753-124759:- | gene-YBL051C_S288C | rna-NM_001178291.1_S288C | cds-NP_009502.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:7334-9340:- | gene-YBL051C_SA1 | rna-NM_001178291.1_SA1 | cds-NP_009502.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:131146-133152:- | gene-YBL051C_ThermosaccDry | rna-NM_001178291.1_ThermosaccDry | cds-NP_009502.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:113314-115320:- | gene-YBL051C_VR1 | rna-NM_001178291.1_VR1 | cds-NP_009502.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:107855-109861:- | gene-YBL051C_ZTW1 | rna-NM_001178291.1_ZTW1 | cds-NP_009502.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:142521-144536:- | gene-YBL051C_Sparadoxus | rna-NM_001178291.1_Sparadoxus | cds-NP_009502.1_Sparadoxus | 90.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |