Gene name: PIB2
Reference locus (S288C): YGL023C
Gene biotype: protein_coding
Description: Protein of unknown function; contains FYVE domain; similar to Fab1 and Vps27
Top 10 interactors (score): GTR2 (0.971); GTR1 (0.963); MEH1 (0.941); TOR1 (0.919); TCO89 (0.909); PIB1 (0.896); KOG1 (0.885); SLM4 (0.863); VPS15 (0.851); ATG8 (0.824); LST7 (0.807); SNA4 (0.797); VPS34 (0.77); LST4 (0.767); EGO2 (0.742); YGR201C (0.711); KAE1 (0.709); VPS30 (0.678); NPR2 (0.672); ARC19 (0.613)
Homologues (species, bitscore): RUFY1 (Homo sapiens, 57.8); Zfyve26 (Mus musculus, 57.8); wdfy3 (Danio rerio, 60.1); rufy1 (Xenopus tropicalis, 60.1); CG6051 (Drosophila melanogaster, 67.0); C26H9A.2 (Caenorhabditis elegans, 58.5); AT1G20110 (Arabidopsis thaliana, 62.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:452261-454168:- | gene-YGL023C_AKU4011 | rna-NM_001180888.3_AKU4011 | cds-NP_011492.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:121971-123878:+ | gene-YGL023C_BG1 | rna-NM_001180888.3_BG1 | cds-NP_011492.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:453214-455121:- | gene-YGL023C_Bruggeman | rna-NM_001180888.3_Bruggeman | cds-NP_011492.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:451510-453417:- | gene-YGL023C_CAT1 | rna-NM_001180888.3_CAT1 | cds-NP_011492.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:453732-455639:- | gene-YGL023C_CBS1585 | rna-NM_001180888.3_CBS1585 | cds-NP_011492.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:448072-449979:- | gene-YGL023C_CBS436 | rna-NM_001180888.3_CBS436 | cds-NP_011492.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:446347-448254:- | gene-YGL023C_CBS6412 | rna-NM_001180888.3_CBS6412 | cds-NP_011492.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:450404-452311:- | gene-YGL023C_CBS6413 | rna-NM_001180888.3_CBS6413 | cds-NP_011492.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:450034-451941:- | gene-YGL023C_CENPK1137D | rna-NM_001180888.3_CENPK1137D | cds-NP_011492.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:440628-442535:- | gene-YGL023C_EthanolRed | rna-NM_001180888.3_EthanolRed | cds-NP_011492.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:443866-445773:- | gene-YGL023C_FaliES1 | rna-NM_001180888.3_FaliES1 | cds-NP_011492.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000177.1:12585-14492:- | gene-YGL023C_JAY291 | rna-NM_001180888.3_JAY291 | cds-NP_011492.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:450443-452350:- | gene-YGL023C_MUCL30387 | rna-NM_001180888.3_MUCL30387 | cds-NP_011492.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:452992-454899:- | gene-YGL023C_MUCL30388 | rna-NM_001180888.3_MUCL30388 | cds-NP_011492.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:449571-451478:- | gene-YGL023C_MUCL39482 | rna-NM_001180888.3_MUCL39482 | cds-NP_011492.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:458996-460903:- | gene-YGL023C_MUCL42920 | rna-NM_001180888.3_MUCL42920 | cds-NP_011492.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:450197-452104:- | gene-YGL023C_NCIM3186 | rna-NM_001180888.3_NCIM3186 | cds-NP_011492.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:443593-445500:- | gene-YGL023C_NCYC1407 | rna-NM_001180888.3_NCYC1407 | cds-NP_011492.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:446250-448157:- | gene-YGL023C_PE2H3 | rna-NM_001180888.3_PE2H3 | cds-NP_011492.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:451300-453207:- | gene-YGL023C_PE2H4 | rna-NM_001180888.3_PE2H4 | cds-NP_011492.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:450197-452104:- | gene-YGL023C_S288C | rna-NM_001180888.3_S288C | cds-NP_011492.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:103496-105403:+ | gene-YGL023C_SA1 | rna-NM_001180888.3_SA1 | cds-NP_011492.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:463191-465098:- | gene-YGL023C_ThermosaccDry | rna-NM_001180888.3_ThermosaccDry | cds-NP_011492.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:553266-555173:- | gene-YGL023C_VR1 | rna-NM_001180888.3_VR1 | cds-NP_011492.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:441816-443723:- | gene-YGL023C_ZTW1 | rna-NM_001180888.3_ZTW1 | cds-NP_011492.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:451422-453329:- | gene-YGL023C_Sparadoxus | rna-NM_001180888.3_Sparadoxus | cds-NP_011492.3_Sparadoxus | 88.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |