Gene name: PIB1
Reference locus (S288C): YDR313C
Gene biotype: protein_coding
Description: E3 ubiquitin-protein ligase PIB1; RING-type ubiquitin ligase of the endosomal and vacuolar membranes; binds phosphatidylinositol(3)-phosphate; contains a FYVE finger domain
Top 10 interactors (score): PIB2 (0.896); VPS27 (0.852); TUL1 (0.829); ATG8 (0.811); PEP7 (0.763); SSH4 (0.699); SLM2 (0.694); TOM1 (0.675); RDS2 (0.644); SYN8 (0.617); RSP5 (0.614); INA1 (0.605); RPT2 (0.604); KTR4 (0.593); PEP5 (0.578); VPS34 (0.575); UBP3 (0.574); RMA1 (0.571); YML082W (0.565); CAB5 (0.563)
Homologues (species, bitscore): FYCO1 (Homo sapiens, 66.2); Eea1 (Mus musculus, 58.5); LOC565649 (Danio rerio, 63.9); wdfy3 (Xenopus tropicalis, 55.5); rush (Drosophila melanogaster, 65.9); lst-2 (Caenorhabditis elegans, 58.5); FAB1A (Arabidopsis thaliana, 58.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1041207-1042067:- | gene-YDR313C_AKU4011 | rna-NM_001180621.1_AKU4011 | cds-NP_010599.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:89491-90351:+ | gene-YDR313C_BG1 | rna-NM_001180621.1_BG1 | cds-NP_010599.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1068473-1069333:- | gene-YDR313C_Bruggeman | rna-NM_001180621.1_Bruggeman | cds-NP_010599.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1055481-1056341:- | gene-YDR313C_CAT1 | rna-NM_001180621.1_CAT1 | cds-NP_010599.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1035652-1036512:- | gene-YDR313C_CBS1585 | rna-NM_001180621.1_CBS1585 | cds-NP_010599.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1054021-1054881:- | gene-YDR313C_CBS436 | rna-NM_001180621.1_CBS436 | cds-NP_010599.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1032339-1033199:- | gene-YDR313C_CBS6412 | rna-NM_001180621.1_CBS6412 | cds-NP_010599.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1053572-1054432:- | gene-YDR313C_CBS6413 | rna-NM_001180621.1_CBS6413 | cds-NP_010599.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1087857-1088717:- | gene-YDR313C_CENPK1137D | rna-NM_001180621.1_CENPK1137D | cds-NP_010599.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:216749-217609:- | gene-YDR313C_EthanolRed | rna-NM_001180621.1_EthanolRed | cds-NP_010599.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1047964-1048824:- | gene-YDR313C_FaliES1 | rna-NM_001180621.1_FaliES1 | cds-NP_010599.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:464-1324:- | gene-YDR313C_JAY291 | rna-NM_001180621.1_JAY291 | cds-NP_010599.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1053984-1054844:- | gene-YDR313C_MUCL30387 | rna-NM_001180621.1_MUCL30387 | cds-NP_010599.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1041059-1041919:- | gene-YDR313C_MUCL30388 | rna-NM_001180621.1_MUCL30388 | cds-NP_010599.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1027459-1028319:- | gene-YDR313C_MUCL39482 | rna-NM_001180621.1_MUCL39482 | cds-NP_010599.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:968603-969463:- | gene-YDR313C_MUCL42920 | rna-NM_001180621.1_MUCL42920 | cds-NP_010599.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1089142-1090002:- | gene-YDR313C_NCIM3186 | rna-NM_001180621.1_NCIM3186 | cds-NP_010599.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1040751-1041611:- | gene-YDR313C_NCYC1407 | rna-NM_001180621.1_NCYC1407 | cds-NP_010599.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1051739-1052599:- | gene-YDR313C_PE2H3 | rna-NM_001180621.1_PE2H3 | cds-NP_010599.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1057324-1058184:- | gene-YDR313C_PE2H4 | rna-NM_001180621.1_PE2H4 | cds-NP_010599.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1089219-1090079:- | gene-YDR313C_S288C | rna-NM_001180621.1_S288C | cds-NP_010599.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:65965-66825:- | gene-YDR313C_SA1 | rna-NM_001180621.1_SA1 | cds-NP_010599.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1052237-1053097:- | gene-YDR313C_ThermosaccDry | rna-NM_001180621.1_ThermosaccDry | cds-NP_010599.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1068156-1069016:- | gene-YDR313C_VR1 | rna-NM_001180621.1_VR1 | cds-NP_010599.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:96353-97213:- | gene-YDR313C_ZTW1 | rna-NM_001180621.1_ZTW1 | cds-NP_010599.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1047779-1048651:- | gene-YDR313C_Sparadoxus | rna-NM_001180621.1_Sparadoxus | cds-NP_010599.1_Sparadoxus | 87.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |