Gene name: PHR1
Reference locus (S288C): YOR386W
Gene biotype: protein_coding
Description: Deoxyribodipyrimidine photo-lyase, mitochondrial; DNA photolyase involved in photoreactivation; repairs pyrimidine dimers in the presence of visible light; induced by DNA damage; regulated by transcriptional repressor Rph1p
Top 10 interactors (score): TOF1 (0.997); HRR25 (0.944); GAS5 (0.917); GAS4 (0.917); GAS2 (0.917); GAS1 (0.916); GAS3 (0.916); RAD7 (0.827); POT1 (0.784); RPH1 (0.772); GRR1 (0.76); AMN1 (0.76); YOR385W (0.746); SKP1 (0.698); FRE5 (0.698); YOR392W (0.698); GIS1 (0.693); FEX1 (0.65); CNB1 (0.634); RNR2 (0.632)
Homologues (species, bitscore): CRY2 (Homo sapiens, 113.2); Cry2 (Mus musculus, 112.5); si:ch1073-390k14.1 (Danio rerio, 120.9); cry1 (Xenopus tropicalis, 110.5); phr6-4 (Drosophila melanogaster, 116.3); CRY2 (Arabidopsis thaliana, 133.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:1053380-1055077:+ | gene-YOR386W_AKU4011 | rna-NM_001183806.1_AKU4011 | cds-NP_015031.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000183.1:6365-8062:- | gene-YOR386W_BG1 | rna-NM_001183806.1_BG1 | cds-NP_015031.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:1037999-1039696:+ | gene-YOR386W_Bruggeman | rna-NM_001183806.1_Bruggeman | cds-NP_015031.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:1038907-1040604:+ | gene-YOR386W_CAT1 | rna-NM_001183806.1_CAT1 | cds-NP_015031.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:1037798-1039495:+ | gene-YOR386W_CBS1585 | rna-NM_001183806.1_CBS1585 | cds-NP_015031.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:1032672-1034369:+ | gene-YOR386W_CBS436 | rna-NM_001183806.1_CBS436 | cds-NP_015031.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:266726-268423:+ | gene-YOR386W_CBS6412 | rna-NM_001183806.1_CBS6412 | cds-NP_015031.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:1042065-1043762:+ | gene-YOR386W_CBS6413 | rna-NM_001183806.1_CBS6413 | cds-NP_015031.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1066695-1068392:+ | gene-YOR386W_CENPK1137D | rna-NM_001183806.1_CENPK1137D | cds-NP_015031.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:281880-283577:+ | gene-YOR386W_EthanolRed | rna-NM_001183806.1_EthanolRed | cds-NP_015031.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:1034888-1036585:+ | gene-YOR386W_FaliES1 | rna-NM_001183806.1_FaliES1 | cds-NP_015031.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000354.1:2134-3831:- | gene-YOR386W_JAY291 | rna-NM_001183806.1_JAY291 | cds-NP_015031.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:1047545-1049242:+ | gene-YOR386W_MUCL30387 | rna-NM_001183806.1_MUCL30387 | cds-NP_015031.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:1044308-1046005:+ | gene-YOR386W_MUCL39482 | rna-NM_001183806.1_MUCL39482 | cds-NP_015031.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:1051986-1053683:+ | gene-YOR386W_MUCL42920 | rna-NM_001183806.1_MUCL42920 | cds-NP_015031.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1066728-1068425:+ | gene-YOR386W_NCIM3186 | rna-NM_001183806.1_NCIM3186 | cds-NP_015031.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:1045340-1047037:+ | gene-YOR386W_NCYC1407 | rna-NM_001183806.1_NCYC1407 | cds-NP_015031.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:1046643-1048340:+ | gene-YOR386W_PE2H3 | rna-NM_001183806.1_PE2H3 | cds-NP_015031.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1062994-1064691:+ | gene-YOR386W_PE2H4 | rna-NM_001183806.1_PE2H4 | cds-NP_015031.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1066839-1068536:+ | gene-YOR386W_S288C | rna-NM_001183806.1_S288C | cds-NP_015031.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:172832-174529:+ | gene-YOR386W_SA1 | rna-NM_001183806.1_SA1 | cds-NP_015031.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:1034070-1035767:+ | gene-YOR386W_ThermosaccDry | rna-NM_001183806.1_ThermosaccDry | cds-NP_015031.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1095658-1097355:+ | gene-YOR386W_VR1 | rna-NM_001183806.1_VR1 | cds-NP_015031.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:766812-768509:+ | gene-YOR386W_ZTW1 | rna-NM_001183806.1_ZTW1 | cds-NP_015031.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:1041598-1043295:+ | gene-YOR386W_Sparadoxus | rna-NM_001183806.1_Sparadoxus | cds-NP_015031.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |