Gene name: PHO90
Reference locus (S288C): YJL198W
Gene biotype: protein_coding
Description: Low-affinity phosphate transporter; acts upstream of Pho81p in regulation of the PHO pathway; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth; PHO90 has a paralog, PHO87, that arose from the whole genome duplication; Belongs to the CitM (TC 2.A.11) transporter family
Top 10 interactors (score): PHO84 (0.983); PHO89 (0.951); SPL2 (0.9); PHO81 (0.852); PHO4 (0.833); PHO85 (0.789); SYG1 (0.759); PHO80 (0.746); GDE1 (0.673); PHO12 (0.67); PHO11 (0.655); VTC3 (0.654); YMD8 (0.597); VTC2 (0.573); VTC4 (0.569); AAH1 (0.545); UBX3 (0.532); YBL055C (0.487); GNP1 (0.481); ERC1 (0.464)
Homologues (species, bitscore): SLC13A5 (Homo sapiens, 84.0); Slc13a3 (Mus musculus, 78.2); slc13a5a (Danio rerio, 68.9); slc13a3 (Xenopus tropicalis, 73.2); Indy (Drosophila melanogaster, 75.5); nac-1 (Caenorhabditis elegans, 87.8); TDT (Arabidopsis thaliana, 88.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:49243-51888:+ | gene-YJL198W_AKU4011 | rna-NM_001181631.1_AKU4011 | cds-NP_012337.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:26523-29168:+ | gene-YJL198W_BG1 | rna-NM_001181631.1_BG1 | cds-NP_012337.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:61054-63699:+ | gene-YJL198W_Bruggeman | rna-NM_001181631.1_Bruggeman | cds-NP_012337.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:63803-66909:+ | gene-YJL198W_CAT1 | rna-NM_001181631.1_CAT1 | cds-NP_012337.1_CAT1 | 84.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:54878-57523:+ | gene-YJL198W_CBS1585 | rna-NM_001181631.1_CBS1585 | cds-NP_012337.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:79625-82270:+ | gene-YJL198W_CBS436 | rna-NM_001181631.1_CBS436 | cds-NP_012337.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:51360-54005:+ | gene-YJL198W_CBS6412 | rna-NM_001181631.1_CBS6412 | cds-NP_012337.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:52353-54998:+ | gene-YJL198W_CBS6413 | rna-NM_001181631.1_CBS6413 | cds-NP_012337.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:43309-45954:+ | gene-YJL198W_CENPK1137D | rna-NM_001181631.1_CENPK1137D | cds-NP_012337.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:53541-56186:+ | gene-YJL198W_EthanolRed | rna-NM_001181631.1_EthanolRed | cds-NP_012337.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:58819-61464:+ | gene-YJL198W_FaliES1 | rna-NM_001181631.1_FaliES1 | cds-NP_012337.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:57284-59929:- | gene-YJL198W_JAY291 | rna-NM_001181631.1_JAY291 | cds-NP_012337.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:62788-65433:+ | gene-YJL198W_MUCL30387 | rna-NM_001181631.1_MUCL30387 | cds-NP_012337.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:58943-61588:+ | gene-YJL198W_MUCL30388 | rna-NM_001181631.1_MUCL30388 | cds-NP_012337.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:53619-56264:+ | gene-YJL198W_MUCL39482 | rna-NM_001181631.1_MUCL39482 | cds-NP_012337.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:58214-60859:+ | gene-YJL198W_MUCL42920 | rna-NM_001181631.1_MUCL42920 | cds-NP_012337.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:60823-63468:+ | gene-YJL198W_NCIM3186 | rna-NM_001181631.1_NCIM3186 | cds-NP_012337.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:52230-54875:+ | gene-YJL198W_NCYC1407 | rna-NM_001181631.1_NCYC1407 | cds-NP_012337.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:64923-67568:+ | gene-YJL198W_PE2H3 | rna-NM_001181631.1_PE2H3 | cds-NP_012337.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:64562-67207:+ | gene-YJL198W_PE2H4 | rna-NM_001181631.1_PE2H4 | cds-NP_012337.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:60844-63489:+ | gene-YJL198W_S288C | rna-NM_001181631.1_S288C | cds-NP_012337.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:90394-93039:- | gene-YJL198W_SA1 | rna-NM_001181631.1_SA1 | cds-NP_012337.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:52013-54658:+ | gene-YJL198W_ThermosaccDry | rna-NM_001181631.1_ThermosaccDry | cds-NP_012337.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:58882-61527:+ | gene-YJL198W_VR1 | rna-NM_001181631.1_VR1 | cds-NP_012337.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:39598-42243:+ | gene-YJL198W_ZTW1 | rna-NM_001181631.1_ZTW1 | cds-NP_012337.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:63903-66548:+ | gene-YJL198W_Sparadoxus | rna-NM_001181631.1_Sparadoxus | cds-NP_012337.1_Sparadoxus | 91.2 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |