Gene name: PHO4
Reference locus (S288C): YFR034C
Gene biotype: protein_coding
Description: Phosphate system positive regulatory protein PHO4; Basic helix-loop-helix (bHLH) transcription factor of the myc-family; activates transcription cooperatively with Pho2p in response to phosphate limitation; binding to 'CACGTG' motif is regulated by chromatin restriction, competitive binding of Cbf1p to the same DNA binding motif and cooperation with Pho2p; function is regulated by phosphorylation at multiple sites and by phosphate availability
Top 10 interactors (score): PHO85 (0.999); PHO80 (0.999); PSE1 (0.998); PHO2 (0.995); PHO81 (0.971); MSN5 (0.966); PHO84 (0.961); CBF1 (0.909); PHO5 (0.891); PHO89 (0.874); PHO87 (0.861); PHO90 (0.833); SPL2 (0.827); SPT15 (0.81); UGP1 (0.78); VTC4 (0.763); PHO12 (0.76); PHO11 (0.748); PHO8 (0.748); TYE7 (0.745)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:215181-216119:- | gene-YFR034C_AKU4011 | rna-NM_001179999.1_AKU4011 | cds-NP_116692.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:44931-45869:+ | gene-YFR034C_BG1 | rna-NM_001179999.1_BG1 | cds-NP_116692.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:218849-219787:- | gene-YFR034C_Bruggeman | rna-NM_001179999.1_Bruggeman | cds-NP_116692.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:220803-221741:- | gene-YFR034C_CAT1 | rna-NM_001179999.1_CAT1 | cds-NP_116692.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:216673-217611:- | gene-YFR034C_CBS1585 | rna-NM_001179999.1_CBS1585 | cds-NP_116692.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:189629-190567:- | gene-YFR034C_CBS436 | rna-NM_001179999.1_CBS436 | cds-NP_116692.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:215750-216688:- | gene-YFR034C_CBS6412 | rna-NM_001179999.1_CBS6412 | cds-NP_116692.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:218408-219346:- | gene-YFR034C_CBS6413 | rna-NM_001179999.1_CBS6413 | cds-NP_116692.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:221117-222055:- | gene-YFR034C_CENPK1137D | rna-NM_001179999.1_CENPK1137D | cds-NP_116692.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:214287-215225:- | gene-YFR034C_EthanolRed | rna-NM_001179999.1_EthanolRed | cds-NP_116692.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:215938-216876:- | gene-YFR034C_FaliES1 | rna-NM_001179999.1_FaliES1 | cds-NP_116692.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000453.1:19065-20003:- | gene-YFR034C_JAY291 | rna-NM_001179999.1_JAY291 | cds-NP_116692.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:219280-220218:- | gene-YFR034C_MUCL30387 | rna-NM_001179999.1_MUCL30387 | cds-NP_116692.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:214777-215715:- | gene-YFR034C_MUCL30388 | rna-NM_001179999.1_MUCL30388 | cds-NP_116692.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:214591-215529:- | gene-YFR034C_MUCL39482 | rna-NM_001179999.1_MUCL39482 | cds-NP_116692.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:214207-215145:- | gene-YFR034C_MUCL42920 | rna-NM_001179999.1_MUCL42920 | cds-NP_116692.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:225019-225957:- | gene-YFR034C_NCIM3186 | rna-NM_001179999.1_NCIM3186 | cds-NP_116692.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:215473-216411:- | gene-YFR034C_NCYC1407 | rna-NM_001179999.1_NCYC1407 | cds-NP_116692.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:257472-258410:- | gene-YFR034C_PE2H3 | rna-NM_001179999.1_PE2H3 | cds-NP_116692.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:257020-257958:- | gene-YFR034C_PE2H4 | rna-NM_001179999.1_PE2H4 | cds-NP_116692.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:225020-225958:- | gene-YFR034C_S288C | rna-NM_001179999.1_S288C | cds-NP_116692.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:98517-99455:+ | gene-YFR034C_SA1 | rna-NM_001179999.1_SA1 | cds-NP_116692.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:215095-216033:- | gene-YFR034C_ThermosaccDry | rna-NM_001179999.1_ThermosaccDry | cds-NP_116692.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:230844-231782:- | gene-YFR034C_VR1 | rna-NM_001179999.1_VR1 | cds-NP_116692.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:145563-146501:- | gene-YFR034C_ZTW1 | rna-NM_001179999.1_ZTW1 | cds-NP_116692.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:238739-239683:- | gene-YFR034C_Sparadoxus | rna-NM_001179999.1_Sparadoxus | cds-NP_116692.1_Sparadoxus | 87.5 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |