Gene name: PHO23
Reference locus (S288C): YNL097C
Gene biotype: protein_coding
Description: Transcriptional regulatory protein PHO23; Component of the Rpd3L histone deacetylase complex; involved in transcriptional regulation of PHO5; affects termination of snoRNAs and cryptic unstable transcripts (CUTs); C-terminus shares significant sequence identity with the human candidate tumor suppressor p33-ING1 and its isoform ING3
Top 10 interactors (score): RPD3 (0.999); SIN3 (0.999); CTI6 (0.999); RXT2 (0.999); HOS2 (0.998); SDS3 (0.998); SAP30 (0.998); EAF3 (0.995); UME1 (0.994); RCO1 (0.994); RXT3 (0.985); UME6 (0.98); DEP1 (0.98); ASH1 (0.977); HAT2 (0.972); SET3 (0.97); SIF2 (0.957); HHT1 (0.929); TOD6 (0.929); YNG2 (0.928)
Homologues (species, bitscore): ING3 (Homo sapiens, 97.4); Ing1 (Mus musculus, 102.1); ing3 (Danio rerio, 99.8); ing1 (Xenopus tropicalis, 100.1); CG9293 (Drosophila melanogaster, 97.4); ing-3 (Caenorhabditis elegans, 77.0); ING1 (Arabidopsis thaliana, 92.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:435015-436007:- | gene-YNL097C_AKU4011 | rna-NM_001182935.3_AKU4011 | cds-NP_014302.3_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:339009-340001:- | gene-YNL097C_BG1 | rna-NM_001182935.3_BG1 | cds-NP_014302.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:445732-446724:- | gene-YNL097C_Bruggeman | rna-NM_001182935.3_Bruggeman | cds-NP_014302.3_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:488763-489755:- | gene-YNL097C_CAT1 | rna-NM_001182935.3_CAT1 | cds-NP_014302.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:435616-436608:- | gene-YNL097C_CBS1585 | rna-NM_001182935.3_CBS1585 | cds-NP_014302.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:504051-505043:- | gene-YNL097C_CBS436 | rna-NM_001182935.3_CBS436 | cds-NP_014302.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:430781-431773:- | gene-YNL097C_CBS6412 | rna-NM_001182935.3_CBS6412 | cds-NP_014302.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:432097-433089:- | gene-YNL097C_CBS6413 | rna-NM_001182935.3_CBS6413 | cds-NP_014302.3_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:435196-436188:- | gene-YNL097C_CENPK1137D | rna-NM_001182935.3_CENPK1137D | cds-NP_014302.3_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:431978-432970:- | gene-YNL097C_EthanolRed | rna-NM_001182935.3_EthanolRed | cds-NP_014302.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:427876-428868:- | gene-YNL097C_FaliES1 | rna-NM_001182935.3_FaliES1 | cds-NP_014302.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000140.1:15532-16524:- | gene-YNL097C_JAY291 | rna-NM_001182935.3_JAY291 | cds-NP_014302.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:441906-442898:- | gene-YNL097C_MUCL30387 | rna-NM_001182935.3_MUCL30387 | cds-NP_014302.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:477282-478274:- | gene-YNL097C_MUCL30388 | rna-NM_001182935.3_MUCL30388 | cds-NP_014302.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:433020-434012:- | gene-YNL097C_MUCL39482 | rna-NM_001182935.3_MUCL39482 | cds-NP_014302.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:437028-438020:- | gene-YNL097C_MUCL42920 | rna-NM_001182935.3_MUCL42920 | cds-NP_014302.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:441335-442327:- | gene-YNL097C_NCIM3186 | rna-NM_001182935.3_NCIM3186 | cds-NP_014302.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:435137-436129:- | gene-YNL097C_NCYC1407 | rna-NM_001182935.3_NCYC1407 | cds-NP_014302.3_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:434043-435035:- | gene-YNL097C_PE2H3 | rna-NM_001182935.3_PE2H3 | cds-NP_014302.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:433447-434439:- | gene-YNL097C_PE2H4 | rna-NM_001182935.3_PE2H4 | cds-NP_014302.3_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:441366-442358:- | gene-YNL097C_S288C | rna-NM_001182935.3_S288C | cds-NP_014302.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:26312-27304:- | gene-YNL097C_SA1 | rna-NM_001182935.3_SA1 | cds-NP_014302.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:428751-429743:- | gene-YNL097C_ThermosaccDry | rna-NM_001182935.3_ThermosaccDry | cds-NP_014302.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:447488-448480:- | gene-YNL097C_VR1 | rna-NM_001182935.3_VR1 | cds-NP_014302.3_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:338594-339586:- | gene-YNL097C_ZTW1 | rna-NM_001182935.3_ZTW1 | cds-NP_014302.3_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:439642-440634:- | gene-YNL097C_Sparadoxus | rna-NM_001182935.3_Sparadoxus | cds-NP_014302.3_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |