Gene name: PHD1
Reference locus (S288C): YKL043W
Gene biotype: protein_coding
Description: Putative transcription factor PHD1; Transcriptional activator that enhances pseudohyphal growth; physically interacts with the Tup1-Cyc8 complex and recruits Tup1p to its targets; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental regulator; potential Cdc28p substrate; PHD1 has a paralog, SOK2, that arose from the whole genome duplication
Top 10 interactors (score): STE12 (0.928); TEC1 (0.917); YAP6 (0.865); MMO1 (0.846); TUP1 (0.828); FLO11 (0.813); NRG1 (0.796); EFG1 (0.757); MSN1 (0.749); MSS11 (0.74); RGM1 (0.735); CIN5 (0.711); SKN7 (0.711); SFL1 (0.697); NRG2 (0.696); HMS2 (0.695); MGA1 (0.687); ROX1 (0.681); RIM101 (0.671); UME6 (0.654)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:342758-343858:+ | gene-YKL043W_AKU4011 | rna-NM_001179609.1_AKU4011 | cds-NP_012881.1_AKU4011 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:300163-301263:- | gene-YKL043W_BG1 | rna-NM_001179609.1_BG1 | cds-NP_012881.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:362022-363122:+ | gene-YKL043W_Bruggeman | rna-NM_001179609.1_Bruggeman | cds-NP_012881.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:358208-359308:+ | gene-YKL043W_CAT1 | rna-NM_001179609.1_CAT1 | cds-NP_012881.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:355489-356589:+ | gene-YKL043W_CBS1585 | rna-NM_001179609.1_CBS1585 | cds-NP_012881.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:353607-354707:+ | gene-YKL043W_CBS436 | rna-NM_001179609.1_CBS436 | cds-NP_012881.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:339622-340722:+ | gene-YKL043W_CBS6412 | rna-NM_001179609.1_CBS6412 | cds-NP_012881.1_CBS6412 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:355450-356550:+ | gene-YKL043W_CBS6413 | rna-NM_001179609.1_CBS6413 | cds-NP_012881.1_CBS6413 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:356406-357506:+ | gene-YKL043W_CENPK1137D | rna-NM_001179609.1_CENPK1137D | cds-NP_012881.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:353443-354543:+ | gene-YKL043W_EthanolRed | rna-NM_001179609.1_EthanolRed | cds-NP_012881.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:354259-355359:+ | gene-YKL043W_FaliES1 | rna-NM_001179609.1_FaliES1 | cds-NP_012881.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:59171-60271:+ | gene-YKL043W_JAY291 | rna-NM_001179609.1_JAY291 | cds-NP_012881.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:362923-364023:+ | gene-YKL043W_MUCL30387 | rna-NM_001179609.1_MUCL30387 | cds-NP_012881.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:357813-358913:+ | gene-YKL043W_MUCL30388 | rna-NM_001179609.1_MUCL30388 | cds-NP_012881.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:354785-355885:+ | gene-YKL043W_MUCL39482 | rna-NM_001179609.1_MUCL39482 | cds-NP_012881.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:359641-360741:+ | gene-YKL043W_MUCL42920 | rna-NM_001179609.1_MUCL42920 | cds-NP_012881.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:356737-357837:+ | gene-YKL043W_NCIM3186 | rna-NM_001179609.1_NCIM3186 | cds-NP_012881.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:354980-356080:+ | gene-YKL043W_NCYC1407 | rna-NM_001179609.1_NCYC1407 | cds-NP_012881.1_NCYC1407 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:379515-380615:+ | gene-YKL043W_PE2H3 | rna-NM_001179609.1_PE2H3 | cds-NP_012881.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:364250-365350:+ | gene-YKL043W_PE2H4 | rna-NM_001179609.1_PE2H4 | cds-NP_012881.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:356748-357848:+ | gene-YKL043W_S288C | rna-NM_001179609.1_S288C | cds-NP_012881.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:34856-35956:+ | gene-YKL043W_SA1 | rna-NM_001179609.1_SA1 | cds-NP_012881.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:355449-356549:+ | gene-YKL043W_ThermosaccDry | rna-NM_001179609.1_ThermosaccDry | cds-NP_012881.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:354586-355686:+ | gene-YKL043W_VR1 | rna-NM_001179609.1_VR1 | cds-NP_012881.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:353461-354561:+ | gene-YKL043W_ZTW1 | rna-NM_001179609.1_ZTW1 | cds-NP_012881.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:372730-373830:+ | gene-YKL043W_Sparadoxus | rna-NM_001179609.1_Sparadoxus | cds-NP_012881.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |