Gene name: PGU1
Reference locus (S288C): YJR153W
Gene biotype: protein_coding
Description: Endo-polygalacturonase; pectolytic enzyme that hydrolyzes the alpha-1,4-glycosidic bonds in the rhamnogalacturonan chains in pectins
Top 10 interactors (score): YFR012W-A (0.748); DCV1 (0.748); YGR146C-A (0.715); SVS1 (0.714); FLO11 (0.71); KSS1 (0.705); NAT2 (0.693); SPO77 (0.651); SBE22 (0.614); MSB2 (0.613); HNT2 (0.572); TRP5 (0.569); DLS1 (0.527); YLR042C (0.526); SLP1 (0.526); GAL10 (0.512); IZH4 (0.497); EFM4 (0.489); ZTA1 (0.483); HKR1 (0.482)
Homologues (species, bitscore): PGAZAT (Arabidopsis thaliana, 111.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:694728-695813:+ | gene-YJR153W_AKU4011 | rna-NM_001181811.3_AKU4011 | cds-NP_012687.3_AKU4011 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:711439-712524:+ | gene-YJR153W_Bruggeman | rna-NM_001181811.3_Bruggeman | cds-NP_012687.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:714716-715801:+ | gene-YJR153W_CAT1 | rna-NM_001181811.3_CAT1 | cds-NP_012687.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:705181-706266:+ | gene-YJR153W_CENPK1137D | rna-NM_001181811.3_CENPK1137D | cds-NP_012687.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:697921-699007:+ | gene-YJR153W_EthanolRed | rna-NM_001181811.3_EthanolRed | cds-NP_012687.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:710662-711748:+ | gene-YJR153W_FaliES1 | rna-NM_001181811.3_FaliES1 | cds-NP_012687.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:711562-712647:+ | gene-YJR153W_MUCL30387 | rna-NM_001181811.3_MUCL30387 | cds-NP_012687.3_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:708656-709741:+ | gene-YJR153W_MUCL30388 | rna-NM_001181811.3_MUCL30388 | cds-NP_012687.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:704636-705722:+ | gene-YJR153W_MUCL42920 | rna-NM_001181811.3_MUCL42920 | cds-NP_012687.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:722794-723879:+ | gene-YJR153W_NCIM3186 | rna-NM_001181811.3_NCIM3186 | cds-NP_012687.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:722815-723900:+ | gene-YJR153W_S288C | rna-NM_001181811.3_S288C | cds-NP_012687.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000108.1:4971-6056:- | gene-YJR153W_SA1 | rna-NM_001181811.3_SA1 | cds-NP_012687.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:704655-705741:+ | gene-YJR153W_ThermosaccDry | rna-NM_001181811.3_ThermosaccDry | cds-NP_012687.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:706482-707567:+ | gene-YJR153W_VR1 | rna-NM_001181811.3_VR1 | cds-NP_012687.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:683387-684472:+ | gene-YJR153W_ZTW1 | rna-NM_001181811.3_ZTW1 | cds-NP_012687.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:717886-718971:+ | gene-YJR153W_Sparadoxus | rna-NM_001181811.3_Sparadoxus | cds-NP_012687.3_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |