Gene name: PGD1
Reference locus (S288C): YGL025C
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for basal and activated transcription; direct target of Cyc8p-Tup1p transcriptional corepressor
Top 10 interactors (score): MED2 (0.999); GAL11 (0.999); SRB5 (0.998); SIN4 (0.998); SRB4 (0.997); RGR1 (0.996); SRB2 (0.996); ROX3 (0.995); SRB6 (0.994); MED1 (0.993); NUT2 (0.993); SRB7 (0.993); MED7 (0.992); MED6 (0.991); CSE2 (0.99); MED4 (0.989); MED8 (0.987); SOH1 (0.987); NUT1 (0.958); MED11 (0.955)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:450828-452021:- | gene-YGL025C_AKU4011 | rna-NM_001180890.1_AKU4011 | cds-NP_011490.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:124118-125314:+ | gene-YGL025C_BG1 | rna-NM_001180890.1_BG1 | cds-NP_011490.2_BG1 | 95.2 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:451802-452974:- | gene-YGL025C_Bruggeman | rna-NM_001180890.1_Bruggeman | cds-NP_011490.2_Bruggeman | 97.8 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:449825-451270:- | gene-YGL025C_CAT1 | rna-NM_001180890.1_CAT1 | cds-NP_011490.2_CAT1 | 82.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:452299-453492:- | gene-YGL025C_CBS1585 | rna-NM_001180890.1_CBS1585 | cds-NP_011490.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:446648-447832:- | gene-YGL025C_CBS436 | rna-NM_001180890.1_CBS436 | cds-NP_011490.2_CBS436 | 96.1 | 98.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:444914-446107:- | gene-YGL025C_CBS6412 | rna-NM_001180890.1_CBS6412 | cds-NP_011490.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:448971-450164:- | gene-YGL025C_CBS6413 | rna-NM_001180890.1_CBS6413 | cds-NP_011490.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:448601-449794:- | gene-YGL025C_CENPK1137D | rna-NM_001180890.1_CENPK1137D | cds-NP_011490.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:439195-440388:- | gene-YGL025C_EthanolRed | rna-NM_001180890.1_EthanolRed | cds-NP_011490.2_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:442433-443626:- | gene-YGL025C_FaliES1 | rna-NM_001180890.1_FaliES1 | cds-NP_011490.2_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000177.1:11152-12345:- | gene-YGL025C_JAY291 | rna-NM_001180890.1_JAY291 | cds-NP_011490.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:449007-450203:- | gene-YGL025C_MUCL30387 | rna-NM_001180890.1_MUCL30387 | cds-NP_011490.2_MUCL30387 | 95.9 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:451556-452752:- | gene-YGL025C_MUCL30388 | rna-NM_001180890.1_MUCL30388 | cds-NP_011490.2_MUCL30388 | 95.8 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:448138-449331:- | gene-YGL025C_MUCL39482 | rna-NM_001180890.1_MUCL39482 | cds-NP_011490.2_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:457584-458756:- | gene-YGL025C_MUCL42920 | rna-NM_001180890.1_MUCL42920 | cds-NP_011490.2_MUCL42920 | 97.9 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:448764-449957:- | gene-YGL025C_NCIM3186 | rna-NM_001180890.1_NCIM3186 | cds-NP_011490.2_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:442160-443353:- | gene-YGL025C_NCYC1407 | rna-NM_001180890.1_NCYC1407 | cds-NP_011490.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:444817-446010:- | gene-YGL025C_PE2H3 | rna-NM_001180890.1_PE2H3 | cds-NP_011490.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:449867-451060:- | gene-YGL025C_PE2H4 | rna-NM_001180890.1_PE2H4 | cds-NP_011490.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:448764-449957:- | gene-YGL025C_S288C | rna-NM_001180890.1_S288C | cds-NP_011490.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:105643-106839:+ | gene-YGL025C_SA1 | rna-NM_001180890.1_SA1 | cds-NP_011490.2_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:461758-462951:- | gene-YGL025C_ThermosaccDry | rna-NM_001180890.1_ThermosaccDry | cds-NP_011490.2_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:551830-553026:- | gene-YGL025C_VR1 | rna-NM_001180890.1_VR1 | cds-NP_011490.2_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:440383-441576:- | gene-YGL025C_ZTW1 | rna-NM_001180890.1_ZTW1 | cds-NP_011490.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:449994-451190:- | gene-YGL025C_Sparadoxus | rna-NM_001180890.1_Sparadoxus | cds-NP_011490.2_Sparadoxus | 87.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |