Gene name: PFS2
Reference locus (S288C): YNL317W
Gene biotype: protein_coding
Description: Polyadenylation factor subunit 2; Integral subunit of the pre-mRNA CPF complex; the cleavage and polyadenylation factor (CPF) complex plays an essential role in mRNA 3'-end formation by bridging different processing factors and thereby promoting the assembly of the processing complex
Top 10 interactors (score): SWD2 (0.999); SYC1 (0.999); YSH1 (0.999); REF2 (0.999); PTI1 (0.999); PTA1 (0.999); PAP1 (0.999); CFT2 (0.999); MPE1 (0.999); SSU72 (0.999); YTH1 (0.999); FIP1 (0.999); CFT1 (0.999); RNA14 (0.998); HSL7 (0.997); GLC7 (0.99); RNA15 (0.987); PCF11 (0.981); SEC13 (0.953); NUP2 (0.951)
Homologues (species, bitscore): WDR33 (Homo sapiens, 280.4); Wdr33 (Mus musculus, 281.2); wdr33 (Danio rerio, 275.4); LOC548794 (Xenopus tropicalis, 266.5); CG1109 (Drosophila melanogaster, 279.3); pfs-2 (Caenorhabditis elegans, 269.6); FY (Arabidopsis thaliana, 283.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:34421-35818:+ | gene-YNL317W_AKU4011 | rna-NM_001183155.1_AKU4011 | cds-NP_014082.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:54820-56217:- | gene-YNL317W_BG1 | rna-NM_001183155.1_BG1 | cds-NP_014082.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:43761-45158:+ | gene-YNL317W_Bruggeman | rna-NM_001183155.1_Bruggeman | cds-NP_014082.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:46384-47781:+ | gene-YNL317W_CAT1 | rna-NM_001183155.1_CAT1 | cds-NP_014082.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:34755-36152:+ | gene-YNL317W_CBS1585 | rna-NM_001183155.1_CBS1585 | cds-NP_014082.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:35248-36645:+ | gene-YNL317W_CBS436 | rna-NM_001183155.1_CBS436 | cds-NP_014082.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:31412-32809:+ | gene-YNL317W_CBS6412 | rna-NM_001183155.1_CBS6412 | cds-NP_014082.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:31601-32998:+ | gene-YNL317W_CBS6413 | rna-NM_001183155.1_CBS6413 | cds-NP_014082.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:34446-35843:+ | gene-YNL317W_CENPK1137D | rna-NM_001183155.1_CENPK1137D | cds-NP_014082.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:31447-32844:+ | gene-YNL317W_EthanolRed | rna-NM_001183155.1_EthanolRed | cds-NP_014082.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:32346-33743:+ | gene-YNL317W_FaliES1 | rna-NM_001183155.1_FaliES1 | cds-NP_014082.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:21775-23172:- | gene-YNL317W_JAY291 | rna-NM_001183155.1_JAY291 | cds-NP_014082.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:44019-45416:+ | gene-YNL317W_MUCL30387 | rna-NM_001183155.1_MUCL30387 | cds-NP_014082.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:37047-38444:+ | gene-YNL317W_MUCL30388 | rna-NM_001183155.1_MUCL30388 | cds-NP_014082.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:32389-33786:+ | gene-YNL317W_MUCL39482 | rna-NM_001183155.1_MUCL39482 | cds-NP_014082.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:34082-35479:+ | gene-YNL317W_MUCL42920 | rna-NM_001183155.1_MUCL42920 | cds-NP_014082.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:40588-41985:+ | gene-YNL317W_NCIM3186 | rna-NM_001183155.1_NCIM3186 | cds-NP_014082.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:33721-35118:+ | gene-YNL317W_NCYC1407 | rna-NM_001183155.1_NCYC1407 | cds-NP_014082.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:30926-32323:+ | gene-YNL317W_PE2H3 | rna-NM_001183155.1_PE2H3 | cds-NP_014082.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:30314-31711:+ | gene-YNL317W_PE2H4 | rna-NM_001183155.1_PE2H4 | cds-NP_014082.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:40619-42016:+ | gene-YNL317W_S288C | rna-NM_001183155.1_S288C | cds-NP_014082.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:55199-56596:- | gene-YNL317W_SA1 | rna-NM_001183155.1_SA1 | cds-NP_014082.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:33203-34600:+ | gene-YNL317W_ThermosaccDry | rna-NM_001183155.1_ThermosaccDry | cds-NP_014082.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:45741-47138:+ | gene-YNL317W_VR1 | rna-NM_001183155.1_VR1 | cds-NP_014082.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:24412-25809:+ | gene-YNL317W_ZTW1 | rna-NM_001183155.1_ZTW1 | cds-NP_014082.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:42386-43789:+ | gene-YNL317W_Sparadoxus | rna-NM_001183155.1_Sparadoxus | cds-NP_014082.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |