Gene name: PFD1
Reference locus (S288C): YJL179W
Gene biotype: protein_coding
Description: Subunit of heterohexameric prefoldin; prefoldin binds cytosolic chaperonin and transfers target proteins to it; involved in the biogenesis of actin and of alpha- and gamma-tubulin; prefoldin complex also localizes to chromatin of actively transcribed genes in the nucleus and facilitates transcriptional elongation
Top 10 interactors (score): YKE2 (0.998); PAC10 (0.992); GIM4 (0.99); GIM3 (0.989); GIM5 (0.987); BUD27 (0.775); YML094C-A (0.638); CIN1 (0.588); ACT1 (0.536); YDR417C (0.528); NIP100 (0.519); SVL3 (0.499); YBR284W (0.499); SHG1 (0.485); CPR4 (0.483); ECM13 (0.451); PRM10 (0.45); VPS4 (0.428); CIN2 (0.413); SWR1 (0.405)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:77181-77510:+ | gene-YJL179W_AKU4011 | rna-NM_001181612.2_AKU4011 | cds-NP_012356.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:54507-54836:+ | gene-YJL179W_BG1 | rna-NM_001181612.2_BG1 | cds-NP_012356.2_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:89009-89338:+ | gene-YJL179W_Bruggeman | rna-NM_001181612.2_Bruggeman | cds-NP_012356.2_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:92478-92807:+ | gene-YJL179W_CAT1 | rna-NM_001181612.2_CAT1 | cds-NP_012356.2_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:82816-83145:+ | gene-YJL179W_CBS1585 | rna-NM_001181612.2_CBS1585 | cds-NP_012356.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:107574-107903:+ | gene-YJL179W_CBS436 | rna-NM_001181612.2_CBS436 | cds-NP_012356.2_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:79298-79627:+ | gene-YJL179W_CBS6412 | rna-NM_001181612.2_CBS6412 | cds-NP_012356.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:80291-80620:+ | gene-YJL179W_CBS6413 | rna-NM_001181612.2_CBS6413 | cds-NP_012356.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:71262-71591:+ | gene-YJL179W_CENPK1137D | rna-NM_001181612.2_CENPK1137D | cds-NP_012356.2_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:81477-81806:+ | gene-YJL179W_EthanolRed | rna-NM_001181612.2_EthanolRed | cds-NP_012356.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:86754-87083:+ | gene-YJL179W_FaliES1 | rna-NM_001181612.2_FaliES1 | cds-NP_012356.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:31652-31981:- | gene-YJL179W_JAY291 | rna-NM_001181612.2_JAY291 | cds-NP_012356.2_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:90737-91066:+ | gene-YJL179W_MUCL30387 | rna-NM_001181612.2_MUCL30387 | cds-NP_012356.2_MUCL30387 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:86898-87227:+ | gene-YJL179W_MUCL30388 | rna-NM_001181612.2_MUCL30388 | cds-NP_012356.2_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:81557-81886:+ | gene-YJL179W_MUCL39482 | rna-NM_001181612.2_MUCL39482 | cds-NP_012356.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:86165-86494:+ | gene-YJL179W_MUCL42920 | rna-NM_001181612.2_MUCL42920 | cds-NP_012356.2_MUCL42920 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:88766-89095:+ | gene-YJL179W_NCIM3186 | rna-NM_001181612.2_NCIM3186 | cds-NP_012356.2_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:80169-80498:+ | gene-YJL179W_NCYC1407 | rna-NM_001181612.2_NCYC1407 | cds-NP_012356.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:92872-93201:+ | gene-YJL179W_PE2H3 | rna-NM_001181612.2_PE2H3 | cds-NP_012356.2_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:92511-92840:+ | gene-YJL179W_PE2H4 | rna-NM_001181612.2_PE2H4 | cds-NP_012356.2_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:88787-89116:+ | gene-YJL179W_S288C | rna-NM_001181612.2_S288C | cds-NP_012356.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:64757-65086:- | gene-YJL179W_SA1 | rna-NM_001181612.2_SA1 | cds-NP_012356.2_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:79948-80277:+ | gene-YJL179W_ThermosaccDry | rna-NM_001181612.2_ThermosaccDry | cds-NP_012356.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:86830-87159:+ | gene-YJL179W_VR1 | rna-NM_001181612.2_VR1 | cds-NP_012356.2_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:67534-67863:+ | gene-YJL179W_ZTW1 | rna-NM_001181612.2_ZTW1 | cds-NP_012356.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:91950-92279:+ | gene-YJL179W_Sparadoxus | rna-NM_001181612.2_Sparadoxus | cds-NP_012356.2_Sparadoxus | 92.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |