Gene name: PFA4
Reference locus (S288C): YOL003C
Gene biotype: protein_coding
Description: Palmitoyltransferase with autoacylation activity; required for palmitoylation of amino acid permeases containing a C-terminal Phe-Trp-Cys site; required for modification of Chs3p; member of the DHHC family of putative palmitoyltransferases
Top 10 interactors (score): AKR1 (0.962); AKR2 (0.951); NCP1 (0.901); VAC8 (0.891); CHS1 (0.865); PSO2 (0.861); CHS3 (0.858); SHR5 (0.827); CHS7 (0.768); SNA4 (0.746); ENV7 (0.726); YPL199C (0.7); YCK2 (0.659); YCK1 (0.626); CHS2 (0.614); ANR2 (0.611); VTI1 (0.607); SEC23 (0.604); SMI1 (0.596); RAS2 (0.595)
Homologues (species, bitscore): ZDHHC20 (Homo sapiens, 90.1); Zdhhc20 (Mus musculus, 89.7); zgc:162723 (Danio rerio, 85.1); zdhhc16 (Xenopus tropicalis, 90.1); CG5196 (Drosophila melanogaster, 94.7); M18.8 (Caenorhabditis elegans, 84.0); AT3G60800 (Arabidopsis thaliana, 102.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:306251-307387:- | gene-YOL003C_AKU4011 | rna-NM_001183257.1_AKU4011 | cds-NP_014640.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:121813-122949:- | gene-YOL003C_BG1 | rna-NM_001183257.1_BG1 | cds-NP_014640.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:309026-310162:- | gene-YOL003C_Bruggeman | rna-NM_001183257.1_Bruggeman | cds-NP_014640.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:307159-308295:- | gene-YOL003C_CAT1 | rna-NM_001183257.1_CAT1 | cds-NP_014640.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:300927-302063:- | gene-YOL003C_CBS1585 | rna-NM_001183257.1_CBS1585 | cds-NP_014640.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:305164-306300:- | gene-YOL003C_CBS436 | rna-NM_001183257.1_CBS436 | cds-NP_014640.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:300231-301367:- | gene-YOL003C_CBS6412 | rna-NM_001183257.1_CBS6412 | cds-NP_014640.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:307764-308900:- | gene-YOL003C_CBS6413 | rna-NM_001183257.1_CBS6413 | cds-NP_014640.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:321576-322712:- | gene-YOL003C_CENPK1137D | rna-NM_001183257.1_CENPK1137D | cds-NP_014640.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:303016-304152:- | gene-YOL003C_EthanolRed | rna-NM_001183257.1_EthanolRed | cds-NP_014640.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:306343-307479:- | gene-YOL003C_FaliES1 | rna-NM_001183257.1_FaliES1 | cds-NP_014640.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000015.1:21787-22923:+ | gene-YOL003C_JAY291 | rna-NM_001183257.1_JAY291 | cds-NP_014640.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:313241-314377:- | gene-YOL003C_MUCL30387 | rna-NM_001183257.1_MUCL30387 | cds-NP_014640.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:316677-317813:- | gene-YOL003C_MUCL30388 | rna-NM_001183257.1_MUCL30388 | cds-NP_014640.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:308410-309546:- | gene-YOL003C_MUCL39482 | rna-NM_001183257.1_MUCL39482 | cds-NP_014640.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:323264-324400:- | gene-YOL003C_MUCL42920 | rna-NM_001183257.1_MUCL42920 | cds-NP_014640.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:321747-322883:- | gene-YOL003C_NCIM3186 | rna-NM_001183257.1_NCIM3186 | cds-NP_014640.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:315096-316232:- | gene-YOL003C_NCYC1407 | rna-NM_001183257.1_NCYC1407 | cds-NP_014640.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:309753-310889:- | gene-YOL003C_PE2H3 | rna-NM_001183257.1_PE2H3 | cds-NP_014640.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:320132-321268:- | gene-YOL003C_PE2H4 | rna-NM_001183257.1_PE2H4 | cds-NP_014640.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:321858-322994:- | gene-YOL003C_S288C | rna-NM_001183257.1_S288C | cds-NP_014640.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:289840-290976:- | gene-YOL003C_SA1 | rna-NM_001183257.1_SA1 | cds-NP_014640.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:304914-306050:- | gene-YOL003C_ThermosaccDry | rna-NM_001183257.1_ThermosaccDry | cds-NP_014640.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:305715-306851:- | gene-YOL003C_VR1 | rna-NM_001183257.1_VR1 | cds-NP_014640.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:39579-40715:- | gene-YOL003C_ZTW1 | rna-NM_001183257.1_ZTW1 | cds-NP_014640.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:313307-314443:- | gene-YOL003C_Sparadoxus | rna-NM_001183257.1_Sparadoxus | cds-NP_014640.1_Sparadoxus | 87.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |