Gene name: PEX9
Reference locus (S288C): YMR018W
Gene biotype: protein_coding
Description: TPR repeat-containing protein YMR018W; Putative protein of unknown function with similarity to human PEX5Rp; transcription increases during colony development similar to genes involved in peroxisome biogenesis; YMR018W is not an essential gene; PEX5Rp is also known as peroxin protein 5 related protein
Top 10 interactors (score): PEX7 (0.996); PEX14 (0.99); FOX2 (0.971); ANT1 (0.946); PEX11 (0.937); PEX3 (0.933); PEX13 (0.92); PEX12 (0.878); PEX1 (0.827); CAT2 (0.823); PEX6 (0.784); PEX21 (0.779); PXA1 (0.77); PEX10 (0.762); PEX2 (0.76); PXP1 (0.76); AGX1 (0.755); PRE7 (0.75); PEX18 (0.747); CTA1 (0.746)
Homologues (species, bitscore): PEX5 (Homo sapiens, 126.7); Pex5 (Mus musculus, 127.5); pex5 (Danio rerio, 116.3); PEX5L (Xenopus tropicalis, 66.6); Pex5 (Drosophila melanogaster, 99.0); prx-5 (Caenorhabditis elegans, 128.6); PEX5 (Arabidopsis thaliana, 111.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:359812-361356:+ | gene-YMR018W_AKU4011 | rna-NM_001182514.1_AKU4011 | cds-NP_013731.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:181499-183043:- | gene-YMR018W_BG1 | rna-NM_001182514.1_BG1 | cds-NP_013731.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:299751-301295:+ | gene-YMR018W_Bruggeman | rna-NM_001182514.1_Bruggeman | cds-NP_013731.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:302266-303810:+ | gene-YMR018W_CAT1 | rna-NM_001182514.1_CAT1 | cds-NP_013731.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:292751-294295:+ | gene-YMR018W_CBS1585 | rna-NM_001182514.1_CBS1585 | cds-NP_013731.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:298297-299841:+ | gene-YMR018W_CBS436 | rna-NM_001182514.1_CBS436 | cds-NP_013731.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:406155-407699:+ | gene-YMR018W_CBS6412 | rna-NM_001182514.1_CBS6412 | cds-NP_013731.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:292009-293553:+ | gene-YMR018W_CBS6413 | rna-NM_001182514.1_CBS6413 | cds-NP_013731.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:304939-306483:+ | gene-YMR018W_CENPK1137D | rna-NM_001182514.1_CENPK1137D | cds-NP_013731.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:292583-294127:+ | gene-YMR018W_EthanolRed | rna-NM_001182514.1_EthanolRed | cds-NP_013731.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:295766-297310:+ | gene-YMR018W_FaliES1 | rna-NM_001182514.1_FaliES1 | cds-NP_013731.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:139630-141174:- | gene-YMR018W_JAY291 | rna-NM_001182514.1_JAY291 | cds-NP_013731.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:297712-299256:+ | gene-YMR018W_MUCL30387 | rna-NM_001182514.1_MUCL30387 | cds-NP_013731.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:302137-303681:+ | gene-YMR018W_MUCL30388 | rna-NM_001182514.1_MUCL30388 | cds-NP_013731.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:293036-294580:+ | gene-YMR018W_MUCL39482 | rna-NM_001182514.1_MUCL39482 | cds-NP_013731.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:298851-300395:+ | gene-YMR018W_MUCL42920 | rna-NM_001182514.1_MUCL42920 | cds-NP_013731.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:310162-311706:+ | gene-YMR018W_NCIM3186 | rna-NM_001182514.1_NCIM3186 | cds-NP_013731.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:292953-294497:+ | gene-YMR018W_NCYC1407 | rna-NM_001182514.1_NCYC1407 | cds-NP_013731.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:298898-300442:+ | gene-YMR018W_PE2H3 | rna-NM_001182514.1_PE2H3 | cds-NP_013731.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:304993-306537:+ | gene-YMR018W_PE2H4 | rna-NM_001182514.1_PE2H4 | cds-NP_013731.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:310208-311752:+ | gene-YMR018W_S288C | rna-NM_001182514.1_S288C | cds-NP_013731.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:226515-228059:- | gene-YMR018W_SA1 | rna-NM_001182514.1_SA1 | cds-NP_013731.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:292835-294379:+ | gene-YMR018W_ThermosaccDry | rna-NM_001182514.1_ThermosaccDry | cds-NP_013731.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:296785-298329:+ | gene-YMR018W_VR1 | rna-NM_001182514.1_VR1 | cds-NP_013731.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:271850-273394:+ | gene-YMR018W_ZTW1 | rna-NM_001182514.1_ZTW1 | cds-NP_013731.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:305631-307175:+ | gene-YMR018W_Sparadoxus | rna-NM_001182514.1_Sparadoxus | cds-NP_013731.1_Sparadoxus | 86.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |