Gene name: PEX7
Reference locus (S288C): YDR142C
Gene biotype: protein_coding
Description: Peroxisomal signal receptor for peroxisomal matrix proteins; recognizes the N-terminal nonapeptide signal (PTS2); WD repeat protein; defects in human homolog cause lethal rhizomelic chondrodysplasia punctata (RCDP)
Top 10 interactors (score): PEX13 (0.999); POT1 (0.999); PEX5 (0.999); PEX14 (0.999); PEX18 (0.998); PEX10 (0.998); PEX21 (0.998); PEX9 (0.996); PEX12 (0.995); PEX6 (0.991); PEX19 (0.985); PEX2 (0.983); PEX11 (0.982); PEX17 (0.979); PEX3 (0.975); POX1 (0.96); PRE7 (0.958); DCI1 (0.928); PEX1 (0.918); PEX8 (0.893)
Homologues (species, bitscore): PEX7 (Homo sapiens, 164.9); Pex7 (Mus musculus, 163.7); pex7 (Danio rerio, 154.8); pex7 (Xenopus tropicalis, 109.4); Pex7 (Drosophila melanogaster, 130.6); rba-1 (Caenorhabditis elegans, 52.8); PEX7 (Arabidopsis thaliana, 203.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:711408-712535:- | gene-YDR142C_AKU4011 | rna-NM_001180449.1_AKU4011 | cds-NP_010426.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:412310-413437:+ | gene-YDR142C_BG1 | rna-NM_001180449.1_BG1 | cds-NP_010426.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:743464-744591:- | gene-YDR142C_Bruggeman | rna-NM_001180449.1_Bruggeman | cds-NP_010426.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:731436-732563:- | gene-YDR142C_CAT1 | rna-NM_001180449.1_CAT1 | cds-NP_010426.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:702446-703573:- | gene-YDR142C_CBS1585 | rna-NM_001180449.1_CBS1585 | cds-NP_010426.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:728343-729470:- | gene-YDR142C_CBS436 | rna-NM_001180449.1_CBS436 | cds-NP_010426.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:698798-699925:- | gene-YDR142C_CBS6412 | rna-NM_001180449.1_CBS6412 | cds-NP_010426.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:727773-728900:- | gene-YDR142C_CBS6413 | rna-NM_001180449.1_CBS6413 | cds-NP_010426.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:732911-734038:- | gene-YDR142C_CENPK1137D | rna-NM_001180449.1_CENPK1137D | cds-NP_010426.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:713170-714297:- | gene-YDR142C_EthanolRed | rna-NM_001180449.1_EthanolRed | cds-NP_010426.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:719964-721091:- | gene-YDR142C_FaliES1 | rna-NM_001180449.1_FaliES1 | cds-NP_010426.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000002.1:72104-73231:- | gene-YDR142C_JAY291 | rna-NM_001180449.1_JAY291 | cds-NP_010426.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:729388-730515:- | gene-YDR142C_MUCL30387 | rna-NM_001180449.1_MUCL30387 | cds-NP_010426.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:718407-719534:- | gene-YDR142C_MUCL30388 | rna-NM_001180449.1_MUCL30388 | cds-NP_010426.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:703788-704915:- | gene-YDR142C_MUCL39482 | rna-NM_001180449.1_MUCL39482 | cds-NP_010426.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:641745-642872:- | gene-YDR142C_MUCL42920 | rna-NM_001180449.1_MUCL42920 | cds-NP_010426.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:740396-741523:- | gene-YDR142C_NCIM3186 | rna-NM_001180449.1_NCIM3186 | cds-NP_010426.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:703190-704317:- | gene-YDR142C_NCYC1407 | rna-NM_001180449.1_NCYC1407 | cds-NP_010426.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:722528-723655:- | gene-YDR142C_PE2H3 | rna-NM_001180449.1_PE2H3 | cds-NP_010426.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:721833-722960:- | gene-YDR142C_PE2H4 | rna-NM_001180449.1_PE2H4 | cds-NP_010426.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:740473-741600:- | gene-YDR142C_S288C | rna-NM_001180449.1_S288C | cds-NP_010426.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:89144-90271:- | gene-YDR142C_SA1 | rna-NM_001180449.1_SA1 | cds-NP_010426.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:719486-720613:- | gene-YDR142C_ThermosaccDry | rna-NM_001180449.1_ThermosaccDry | cds-NP_010426.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:732842-733969:- | gene-YDR142C_VR1 | rna-NM_001180449.1_VR1 | cds-NP_010426.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:717067-718194:- | gene-YDR142C_ZTW1 | rna-NM_001180449.1_ZTW1 | cds-NP_010426.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:721628-722758:- | gene-YDR142C_Sparadoxus | rna-NM_001180449.1_Sparadoxus | cds-NP_010426.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |