Gene name: PEX6
Reference locus (S288C): YNL329C
Gene biotype: protein_coding
Description: Peroxisomal ATPase PEX6; AAA-peroxin; heterodimerizes with AAA-peroxin Pex1p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; mutations in human PEX6 can lead to severe peroxisomal disorders and early death
Top 10 interactors (score): PEX1 (0.999); PEX13 (0.999); PEX15 (0.998); PEX5 (0.998); PEX14 (0.998); PEX12 (0.996); PEX10 (0.996); PEX19 (0.995); PEX7 (0.991); PEX2 (0.99); PEX3 (0.99); PEX11 (0.989); PEX17 (0.975); PEX4 (0.975); PEX8 (0.964); PRE7 (0.929); PEX22 (0.908); PEX18 (0.866); UBI4 (0.84); UBP15 (0.831)
Homologues (species, bitscore): PEX6 (Homo sapiens, 386.7); Pex6 (Mus musculus, 398.3); pex6 (Danio rerio, 375.2); vcp (Xenopus tropicalis, 270.4); Pex6 (Drosophila melanogaster, 309.7); prx-6 (Caenorhabditis elegans, 266.5); PEX6 (Arabidopsis thaliana, 416.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:13395-16487:- | gene-YNL329C_AKU4011 | rna-NM_001183167.1_AKU4011 | cds-NP_014070.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000211.1:1070-4162:+ | gene-YNL329C_BG1 | rna-NM_001183167.1_BG1 | cds-NP_014070.1_BG1 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:21859-24951:- | gene-YNL329C_Bruggeman | rna-NM_001183167.1_Bruggeman | cds-NP_014070.1_Bruggeman | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:24937-28029:- | gene-YNL329C_CAT1 | rna-NM_001183167.1_CAT1 | cds-NP_014070.1_CAT1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:13791-16883:- | gene-YNL329C_CBS1585 | rna-NM_001183167.1_CBS1585 | cds-NP_014070.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:14162-17254:- | gene-YNL329C_CBS436 | rna-NM_001183167.1_CBS436 | cds-NP_014070.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:10447-13539:- | gene-YNL329C_CBS6412 | rna-NM_001183167.1_CBS6412 | cds-NP_014070.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:10409-13501:- | gene-YNL329C_CBS6413 | rna-NM_001183167.1_CBS6413 | cds-NP_014070.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:13373-16465:- | gene-YNL329C_CENPK1137D | rna-NM_001183167.1_CENPK1137D | cds-NP_014070.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:10255-13347:- | gene-YNL329C_EthanolRed | rna-NM_001183167.1_EthanolRed | cds-NP_014070.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:11154-14246:- | gene-YNL329C_FaliES1 | rna-NM_001183167.1_FaliES1 | cds-NP_014070.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:41179-44271:+ | gene-YNL329C_JAY291 | rna-NM_001183167.1_JAY291 | cds-NP_014070.1_JAY291 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:22617-25806:- | gene-YNL329C_MUCL30387 | rna-NM_001183167.1_MUCL30387 | cds-NP_014070.1_MUCL30387 | 96.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:15967-19059:- | gene-YNL329C_MUCL30388 | rna-NM_001183167.1_MUCL30388 | cds-NP_014070.1_MUCL30388 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:11195-14287:- | gene-YNL329C_MUCL39482 | rna-NM_001183167.1_MUCL39482 | cds-NP_014070.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:12991-16083:- | gene-YNL329C_MUCL42920 | rna-NM_001183167.1_MUCL42920 | cds-NP_014070.1_MUCL42920 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:19510-22602:- | gene-YNL329C_NCIM3186 | rna-NM_001183167.1_NCIM3186 | cds-NP_014070.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:12529-15621:- | gene-YNL329C_NCYC1407 | rna-NM_001183167.1_NCYC1407 | cds-NP_014070.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:9827-12919:- | gene-YNL329C_PE2H3 | rna-NM_001183167.1_PE2H3 | cds-NP_014070.1_PE2H3 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:9215-12307:- | gene-YNL329C_PE2H4 | rna-NM_001183167.1_PE2H4 | cds-NP_014070.1_PE2H4 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:19541-22633:- | gene-YNL329C_S288C | rna-NM_001183167.1_S288C | cds-NP_014070.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:74711-77803:+ | gene-YNL329C_SA1 | rna-NM_001183167.1_SA1 | cds-NP_014070.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:12011-15103:- | gene-YNL329C_ThermosaccDry | rna-NM_001183167.1_ThermosaccDry | cds-NP_014070.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:24653-27745:- | gene-YNL329C_VR1 | rna-NM_001183167.1_VR1 | cds-NP_014070.1_VR1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:3221-6313:- | gene-YNL329C_ZTW1 | rna-NM_001183167.1_ZTW1 | cds-NP_014070.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:21277-24369:- | gene-YNL329C_Sparadoxus | rna-NM_001183167.1_Sparadoxus | cds-NP_014070.1_Sparadoxus | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |