Gene name: PEX4
Reference locus (S288C): YGR133W
Gene biotype: protein_coding
Description: Ubiquitin-conjugating enzyme E2-21 kDa; Peroxisomal ubiquitin conjugating enzyme; required for peroxisomal matrix protein import and peroxisome biogenesis
Top 10 interactors (score): PEX22 (0.999); PEX12 (0.998); PEX10 (0.996); PEX2 (0.976); PEX6 (0.975); PEX13 (0.961); PEX5 (0.943); PEX1 (0.94); UBA1 (0.936); PEX19 (0.931); PEX8 (0.909); PRE7 (0.907); PEX15 (0.9); PEX17 (0.899); PEX21 (0.892); PEX3 (0.885); MMS2 (0.869); PEX18 (0.852); PEX14 (0.846); RPS31 (0.842)
Homologues (species, bitscore): UBE2K (Homo sapiens, 80.5); Ube2k (Mus musculus, 80.5); ube2kb (Danio rerio, 80.9); ube2d1 (Xenopus tropicalis, 76.3); CG3473 (Drosophila melanogaster, 74.3); ubc-1 (Caenorhabditis elegans, 73.9); PEX4 (Arabidopsis thaliana, 115.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:735873-736424:+ | gene-YGR133W_AKU4011 | rna-NM_001181262.1_AKU4011 | cds-NP_011649.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:14646-15197:+ | gene-YGR133W_BG1 | rna-NM_001181262.1_BG1 | cds-NP_011649.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:738670-739221:+ | gene-YGR133W_Bruggeman | rna-NM_001181262.1_Bruggeman | cds-NP_011649.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:737418-737969:+ | gene-YGR133W_CAT1 | rna-NM_001181262.1_CAT1 | cds-NP_011649.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:736856-737407:+ | gene-YGR133W_CBS1585 | rna-NM_001181262.1_CBS1585 | cds-NP_011649.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:740246-740797:+ | gene-YGR133W_CBS436 | rna-NM_001181262.1_CBS436 | cds-NP_011649.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:728532-729083:+ | gene-YGR133W_CBS6412 | rna-NM_001181262.1_CBS6412 | cds-NP_011649.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:733465-734016:+ | gene-YGR133W_CBS6413 | rna-NM_001181262.1_CBS6413 | cds-NP_011649.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:756608-757159:+ | gene-YGR133W_CENPK1137D | rna-NM_001181262.1_CENPK1137D | cds-NP_011649.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:722897-723448:+ | gene-YGR133W_EthanolRed | rna-NM_001181262.1_EthanolRed | cds-NP_011649.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:726758-727309:+ | gene-YGR133W_FaliES1 | rna-NM_001181262.1_FaliES1 | cds-NP_011649.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000305.1:6535-7086:- | gene-YGR133W_JAY291 | rna-NM_001181262.1_JAY291 | cds-NP_011649.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:845810-846361:+ | gene-YGR133W_MUCL30387 | rna-NM_001181262.1_MUCL30387 | cds-NP_011649.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:738685-739236:+ | gene-YGR133W_MUCL30388 | rna-NM_001181262.1_MUCL30388 | cds-NP_011649.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:732582-733133:+ | gene-YGR133W_MUCL39482 | rna-NM_001181262.1_MUCL39482 | cds-NP_011649.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:742681-743232:+ | gene-YGR133W_MUCL42920 | rna-NM_001181262.1_MUCL42920 | cds-NP_011649.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:756896-757447:+ | gene-YGR133W_NCIM3186 | rna-NM_001181262.1_NCIM3186 | cds-NP_011649.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:727283-727834:+ | gene-YGR133W_NCYC1407 | rna-NM_001181262.1_NCYC1407 | cds-NP_011649.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:747137-747688:+ | gene-YGR133W_PE2H3 | rna-NM_001181262.1_PE2H3 | cds-NP_011649.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:752247-752798:+ | gene-YGR133W_PE2H4 | rna-NM_001181262.1_PE2H4 | cds-NP_011649.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:756896-757447:+ | gene-YGR133W_S288C | rna-NM_001181262.1_S288C | cds-NP_011649.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:178032-178583:+ | gene-YGR133W_SA1 | rna-NM_001181262.1_SA1 | cds-NP_011649.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:747381-747932:+ | gene-YGR133W_ThermosaccDry | rna-NM_001181262.1_ThermosaccDry | cds-NP_011649.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:850884-851435:+ | gene-YGR133W_VR1 | rna-NM_001181262.1_VR1 | cds-NP_011649.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:49527-50078:+ | gene-YGR133W_ZTW1 | rna-NM_001181262.1_ZTW1 | cds-NP_011649.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:737179-737730:+ | gene-YGR133W_Sparadoxus | rna-NM_001181262.1_Sparadoxus | cds-NP_011649.1_Sparadoxus | 85.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |