Gene name: PEX30
Reference locus (S288C): YLR324W
Gene biotype: protein_coding
Description: ER-resident protein involved in peroxisomal biogenesis; ER-localized protein that associates with peroxisomes; interacts with Pex29p and reticulons Rtn1p and Yop1p to regulate peroxisome biogenesis from the ER; role in peroxisomal-destined vesicular flow from the ER; partially redundant with Pex31p; may function at a step downstream of steps mediated by Pex28p and Pex29p; PEX30 has a paralog, PEX31, that arose from the whole genome duplication
Top 10 interactors (score): PEX32 (0.999); PEX31 (0.999); PEX29 (0.96); RTN1 (0.922); PEX28 (0.892); YOP1 (0.838); INP1 (0.821); PEX19 (0.812); RTN2 (0.791); PEX25 (0.779); SEI1 (0.755); PEX11 (0.752); PEX15 (0.747); PEX27 (0.746); PEX3 (0.745); PEX17 (0.712); PRE7 (0.711); PEX34 (0.694); INP2 (0.651); PEX8 (0.651)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:727670-729241:+ | gene-YLR324W_AKU4011 | rna-NM_001182213.1_AKU4011 | cds-NP_013428.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:3442-5013:- | gene-YLR324W_BG1 | rna-NM_001182213.1_BG1 | cds-NP_013428.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:763503-765074:+ | gene-YLR324W_Bruggeman | rna-NM_001182213.1_Bruggeman | cds-NP_013428.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:761657-763228:+ | gene-YLR324W_CAT1 | rna-NM_001182213.1_CAT1 | cds-NP_013428.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:762586-764157:+ | gene-YLR324W_CBS1585 | rna-NM_001182213.1_CBS1585 | cds-NP_013428.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:747186-748757:+ | gene-YLR324W_CBS436 | rna-NM_001182213.1_CBS436 | cds-NP_013428.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:800541-802112:+ | gene-YLR324W_CBS6412 | rna-NM_001182213.1_CBS6412 | cds-NP_013428.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:763258-764829:+ | gene-YLR324W_CBS6413 | rna-NM_001182213.1_CBS6413 | cds-NP_013428.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:763829-765400:+ | gene-YLR324W_CENPK1137D | rna-NM_001182213.1_CENPK1137D | cds-NP_013428.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:720953-722524:+ | gene-YLR324W_EthanolRed | rna-NM_001182213.1_EthanolRed | cds-NP_013428.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:750154-751725:+ | gene-YLR324W_FaliES1 | rna-NM_001182213.1_FaliES1 | cds-NP_013428.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:16134-17705:- | gene-YLR324W_JAY291 | rna-NM_001182213.1_JAY291 | cds-NP_013428.1_JAY291 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:762730-764301:+ | gene-YLR324W_MUCL30387 | rna-NM_001182213.1_MUCL30387 | cds-NP_013428.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:768315-769886:+ | gene-YLR324W_MUCL30388 | rna-NM_001182213.1_MUCL30388 | cds-NP_013428.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:763827-765398:+ | gene-YLR324W_MUCL39482 | rna-NM_001182213.1_MUCL39482 | cds-NP_013428.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:758979-760550:+ | gene-YLR324W_MUCL42920 | rna-NM_001182213.1_MUCL42920 | cds-NP_013428.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:779189-780760:+ | gene-YLR324W_NCIM3186 | rna-NM_001182213.1_NCIM3186 | cds-NP_013428.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:773167-774738:+ | gene-YLR324W_NCYC1407 | rna-NM_001182213.1_NCYC1407 | cds-NP_013428.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:760949-762520:+ | gene-YLR324W_PE2H3 | rna-NM_001182213.1_PE2H3 | cds-NP_013428.1_PE2H3 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:760693-762264:+ | gene-YLR324W_PE2H4 | rna-NM_001182213.1_PE2H4 | cds-NP_013428.1_PE2H4 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:779215-780786:+ | gene-YLR324W_S288C | rna-NM_001182213.1_S288C | cds-NP_013428.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:3523-5094:- | gene-YLR324W_SA1 | rna-NM_001182213.1_SA1 | cds-NP_013428.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:752046-753617:+ | gene-YLR324W_ThermosaccDry | rna-NM_001182213.1_ThermosaccDry | cds-NP_013428.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:764165-765736:+ | gene-YLR324W_VR1 | rna-NM_001182213.1_VR1 | cds-NP_013428.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:90460-92031:+ | gene-YLR324W_ZTW1 | rna-NM_001182213.1_ZTW1 | cds-NP_013428.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:738225-739796:+ | gene-YLR324W_Sparadoxus | rna-NM_001182213.1_Sparadoxus | cds-NP_013428.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |