Gene name: PEX3
Reference locus (S288C): YDR329C
Gene biotype: protein_coding
Description: Peroxisomal biogenesis factor 3; Peroxisomal membrane protein (PMP); required for proper localization and stability of PMPs; anchors peroxisome retention factor Inp1p at the peroxisomal membrane; interacts with Pex19p
Top 10 interactors (score): PEX12 (0.999); PEX13 (0.999); PEX19 (0.999); PEX11 (0.999); PEX5 (0.99); PEX25 (0.99); INP1 (0.99); PEX6 (0.99); PEX14 (0.989); PEX2 (0.987); PEX10 (0.983); ANT1 (0.983); PEX1 (0.979); PEX15 (0.976); PEX7 (0.975); ATG36 (0.97); FIS1 (0.944); PEX9 (0.933); FOX2 (0.922); FAA2 (0.918)
Homologues (species, bitscore): PEX3 (Homo sapiens, 50.4); Pex3 (Mus musculus, 51.2); pex3 (Danio rerio, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1072309-1073634:- | gene-YDR329C_AKU4011 | rna-NM_001180637.3_AKU4011 | cds-NP_010616.3_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:57925-59250:+ | gene-YDR329C_BG1 | rna-NM_001180637.3_BG1 | cds-NP_010616.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1099854-1101179:- | gene-YDR329C_Bruggeman | rna-NM_001180637.3_Bruggeman | cds-NP_010616.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1086597-1087922:- | gene-YDR329C_CAT1 | rna-NM_001180637.3_CAT1 | cds-NP_010616.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1066753-1068078:- | gene-YDR329C_CBS1585 | rna-NM_001180637.3_CBS1585 | cds-NP_010616.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1085137-1086462:- | gene-YDR329C_CBS436 | rna-NM_001180637.3_CBS436 | cds-NP_010616.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1063441-1064766:- | gene-YDR329C_CBS6412 | rna-NM_001180637.3_CBS6412 | cds-NP_010616.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1084672-1085997:- | gene-YDR329C_CBS6413 | rna-NM_001180637.3_CBS6413 | cds-NP_010616.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1124908-1126233:- | gene-YDR329C_CENPK1137D | rna-NM_001180637.3_CENPK1137D | cds-NP_010616.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:247849-249174:- | gene-YDR329C_EthanolRed | rna-NM_001180637.3_EthanolRed | cds-NP_010616.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1079064-1080389:- | gene-YDR329C_FaliES1 | rna-NM_001180637.3_FaliES1 | cds-NP_010616.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:31576-32901:- | gene-YDR329C_JAY291 | rna-NM_001180637.3_JAY291 | cds-NP_010616.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1085098-1086423:- | gene-YDR329C_MUCL30387 | rna-NM_001180637.3_MUCL30387 | cds-NP_010616.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1074050-1075375:- | gene-YDR329C_MUCL30388 | rna-NM_001180637.3_MUCL30388 | cds-NP_010616.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1058560-1059885:- | gene-YDR329C_MUCL39482 | rna-NM_001180637.3_MUCL39482 | cds-NP_010616.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1005631-1006956:- | gene-YDR329C_MUCL42920 | rna-NM_001180637.3_MUCL42920 | cds-NP_010616.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1126193-1127518:- | gene-YDR329C_NCIM3186 | rna-NM_001180637.3_NCIM3186 | cds-NP_010616.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1071851-1073176:- | gene-YDR329C_NCYC1407 | rna-NM_001180637.3_NCYC1407 | cds-NP_010616.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1082854-1084179:- | gene-YDR329C_PE2H3 | rna-NM_001180637.3_PE2H3 | cds-NP_010616.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1088439-1089764:- | gene-YDR329C_PE2H4 | rna-NM_001180637.3_PE2H4 | cds-NP_010616.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1126270-1127595:- | gene-YDR329C_S288C | rna-NM_001180637.3_S288C | cds-NP_010616.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:97081-98406:- | gene-YDR329C_SA1 | rna-NM_001180637.3_SA1 | cds-NP_010616.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1083337-1084662:- | gene-YDR329C_ThermosaccDry | rna-NM_001180637.3_ThermosaccDry | cds-NP_010616.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1099254-1100579:- | gene-YDR329C_VR1 | rna-NM_001180637.3_VR1 | cds-NP_010616.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:127449-128774:- | gene-YDR329C_ZTW1 | rna-NM_001180637.3_ZTW1 | cds-NP_010616.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1078763-1080082:- | gene-YDR329C_Sparadoxus | rna-NM_001180637.3_Sparadoxus | cds-NP_010616.3_Sparadoxus | 88.0 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |