Gene name: PEX29
Reference locus (S288C): YDR479C
Gene biotype: protein_coding
Description: ER-resident protein involved in peroxisomal biogenesis; ER-localized protein that associates with peroxisomes; interacts with Pex30p and reticulons Rtn1p and Yop1p to regulate peroxisome biogenesis from the ER; role in peroxisomal-destined vesicular flow from the ER; regulates peroxisomal size, number and distribution; Pex28p and Pex29p may act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; forms ER foci upon DNA replication stress
Top 10 interactors (score): PEX30 (0.96); PEX31 (0.889); PEX32 (0.867); PEX25 (0.713); SNM1 (0.691); YOP1 (0.679); MRPL3 (0.668); PEX17 (0.651); PEX11 (0.651); TVP18 (0.645); PRM8 (0.645); TVP15 (0.645); ULP1 (0.645); PEX3 (0.617); PEX19 (0.591); YDR476C (0.578); PEX6 (0.567); UFD2 (0.56); PEX28 (0.559); SSM4 (0.531)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1355134-1356798:- | gene-YDR479C_AKU4011 | rna-NM_001180787.1_AKU4011 | cds-NP_010767.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:230239-231903:- | gene-YDR479C_BG1 | rna-NM_001180787.1_BG1 | cds-NP_010767.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1386541-1388205:- | gene-YDR479C_Bruggeman | rna-NM_001180787.1_Bruggeman | cds-NP_010767.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1363689-1365353:- | gene-YDR479C_CAT1 | rna-NM_001180787.1_CAT1 | cds-NP_010767.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1349433-1351097:- | gene-YDR479C_CBS1585 | rna-NM_001180787.1_CBS1585 | cds-NP_010767.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1368791-1370455:- | gene-YDR479C_CBS436 | rna-NM_001180787.1_CBS436 | cds-NP_010767.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1345057-1346721:- | gene-YDR479C_CBS6412 | rna-NM_001180787.1_CBS6412 | cds-NP_010767.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1368068-1369732:- | gene-YDR479C_CBS6413 | rna-NM_001180787.1_CBS6413 | cds-NP_010767.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1413906-1415570:- | gene-YDR479C_CENPK1137D | rna-NM_001180787.1_CENPK1137D | cds-NP_010767.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1358475-1360139:- | gene-YDR479C_EthanolRed | rna-NM_001180787.1_EthanolRed | cds-NP_010767.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1362028-1363692:- | gene-YDR479C_FaliES1 | rna-NM_001180787.1_FaliES1 | cds-NP_010767.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:60280-61944:- | gene-YDR479C_JAY291 | rna-NM_001180787.1_JAY291 | cds-NP_010767.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1369032-1370696:- | gene-YDR479C_MUCL30387 | rna-NM_001180787.1_MUCL30387 | cds-NP_010767.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1351055-1352719:- | gene-YDR479C_MUCL30388 | rna-NM_001180787.1_MUCL30388 | cds-NP_010767.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1340918-1342582:- | gene-YDR479C_MUCL39482 | rna-NM_001180787.1_MUCL39482 | cds-NP_010767.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1283707-1285371:- | gene-YDR479C_MUCL42920 | rna-NM_001180787.1_MUCL42920 | cds-NP_010767.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1415133-1416797:- | gene-YDR479C_NCIM3186 | rna-NM_001180787.1_NCIM3186 | cds-NP_010767.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1354687-1356351:- | gene-YDR479C_NCYC1407 | rna-NM_001180787.1_NCYC1407 | cds-NP_010767.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1365532-1367196:- | gene-YDR479C_PE2H3 | rna-NM_001180787.1_PE2H3 | cds-NP_010767.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1371106-1372770:- | gene-YDR479C_PE2H4 | rna-NM_001180787.1_PE2H4 | cds-NP_010767.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1415210-1416874:- | gene-YDR479C_S288C | rna-NM_001180787.1_S288C | cds-NP_010767.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:200284-201948:+ | gene-YDR479C_SA1 | rna-NM_001180787.1_SA1 | cds-NP_010767.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1366250-1367914:- | gene-YDR479C_ThermosaccDry | rna-NM_001180787.1_ThermosaccDry | cds-NP_010767.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1381975-1383639:- | gene-YDR479C_VR1 | rna-NM_001180787.1_VR1 | cds-NP_010767.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:408917-410580:- | gene-YDR479C_ZTW1 | rna-NM_001180787.1_ZTW1 | cds-NP_010767.1_ZTW1 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1369019-1370683:- | gene-YDR479C_Sparadoxus | rna-NM_001180787.1_Sparadoxus | cds-NP_010767.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |