Gene name: PEX28
Reference locus (S288C): YHR150W
Gene biotype: protein_coding
Description: Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p
Top 10 interactors (score): PEX32 (0.92); PEX30 (0.892); PEX31 (0.86); PEX3 (0.698); PEX11 (0.659); PEX8 (0.62); NPY1 (0.619); PEX17 (0.617); PEX7 (0.615); PEX25 (0.595); PEX19 (0.582); PEX6 (0.569); PCS60 (0.569); PEX5 (0.564); PEX29 (0.559); PCD1 (0.531); SEI1 (0.528); PEX27 (0.526); PEX21 (0.45); YOP1 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:384342-386081:+ | gene-YHR150W_AKU4011 | rna-NM_001179281.1_AKU4011 | cds-NP_012020.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:131669-133408:- | gene-YHR150W_BG1 | rna-NM_001179281.1_BG1 | cds-NP_012020.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:391582-393321:+ | gene-YHR150W_Bruggeman | rna-NM_001179281.1_Bruggeman | cds-NP_012020.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:386982-388721:+ | gene-YHR150W_CAT1 | rna-NM_001179281.1_CAT1 | cds-NP_012020.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:383799-385538:+ | gene-YHR150W_CBS1585 | rna-NM_001179281.1_CBS1585 | cds-NP_012020.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:381235-382974:+ | gene-YHR150W_CBS436 | rna-NM_001179281.1_CBS436 | cds-NP_012020.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:384239-385978:+ | gene-YHR150W_CBS6412 | rna-NM_001179281.1_CBS6412 | cds-NP_012020.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:384679-386418:+ | gene-YHR150W_CBS6413 | rna-NM_001179281.1_CBS6413 | cds-NP_012020.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:390423-392162:+ | gene-YHR150W_CENPK1137D | rna-NM_001179281.1_CENPK1137D | cds-NP_012020.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:442880-444619:+ | gene-YHR150W_EthanolRed | rna-NM_001179281.1_EthanolRed | cds-NP_012020.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:385323-387062:+ | gene-YHR150W_FaliES1 | rna-NM_001179281.1_FaliES1 | cds-NP_012020.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:52782-54521:- | gene-YHR150W_JAY291 | rna-NM_001179281.1_JAY291 | cds-NP_012020.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:392663-394402:+ | gene-YHR150W_MUCL30387 | rna-NM_001179281.1_MUCL30387 | cds-NP_012020.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:392104-393843:+ | gene-YHR150W_MUCL30388 | rna-NM_001179281.1_MUCL30388 | cds-NP_012020.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:383710-385449:+ | gene-YHR150W_MUCL39482 | rna-NM_001179281.1_MUCL39482 | cds-NP_012020.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:390254-391993:+ | gene-YHR150W_MUCL42920 | rna-NM_001179281.1_MUCL42920 | cds-NP_012020.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:397133-398872:+ | gene-YHR150W_NCIM3186 | rna-NM_001179281.1_NCIM3186 | cds-NP_012020.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:386168-387907:+ | gene-YHR150W_NCYC1407 | rna-NM_001179281.1_NCYC1407 | cds-NP_012020.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:385293-387032:+ | gene-YHR150W_PE2H3 | rna-NM_001179281.1_PE2H3 | cds-NP_012020.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:392720-394459:+ | gene-YHR150W_PE2H4 | rna-NM_001179281.1_PE2H4 | cds-NP_012020.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:397251-398990:+ | gene-YHR150W_S288C | rna-NM_001179281.1_S288C | cds-NP_012020.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:52840-54579:- | gene-YHR150W_SA1 | rna-NM_001179281.1_SA1 | cds-NP_012020.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:386406-388145:+ | gene-YHR150W_ThermosaccDry | rna-NM_001179281.1_ThermosaccDry | cds-NP_012020.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:394216-395955:+ | gene-YHR150W_VR1 | rna-NM_001179281.1_VR1 | cds-NP_012020.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:376647-378386:+ | gene-YHR150W_ZTW1 | rna-NM_001179281.1_ZTW1 | cds-NP_012020.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:382777-384516:+ | gene-YHR150W_Sparadoxus | rna-NM_001179281.1_Sparadoxus | cds-NP_012020.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |