Gene name: PEX25
Reference locus (S288C): YPL112C
Gene biotype: protein_coding
Description: Peripheral peroxisomal membrane peroxin; required for the regulation of peroxisome size and maintenance, recruits GTPase Rho1p to peroxisomes, induced by oleate, interacts with Pex27p; PEX25 has a paralog, PEX27, that arose from the whole genome duplication
Top 10 interactors (score): PEX27 (0.999); PEX3 (0.99); PEX11 (0.982); PEX19 (0.923); DCI1 (0.883); PEX34 (0.874); INP1 (0.863); RHO1 (0.852); PRE7 (0.843); PEX13 (0.833); PEX8 (0.813); PEX32 (0.811); PEX14 (0.785); PEX30 (0.779); INP2 (0.766); VPS1 (0.766); PEX15 (0.749); DNM1 (0.746); PEX22 (0.746); PEX17 (0.745)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:315075-316259:- | gene-YPL112C_AKU4011 | rna-NM_001183926.1_AKU4011 | cds-NP_015213.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:520832-522016:- | gene-YPL112C_BG1 | rna-NM_001183926.1_BG1 | cds-NP_015213.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:341081-342265:- | gene-YPL112C_Bruggeman | rna-NM_001183926.1_Bruggeman | cds-NP_015213.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:337748-338932:- | gene-YPL112C_CAT1 | rna-NM_001183926.1_CAT1 | cds-NP_015213.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:319148-320332:- | gene-YPL112C_CBS1585 | rna-NM_001183926.1_CBS1585 | cds-NP_015213.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:333824-335008:- | gene-YPL112C_CBS436 | rna-NM_001183926.1_CBS436 | cds-NP_015213.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:323817-325001:- | gene-YPL112C_CBS6412 | rna-NM_001183926.1_CBS6412 | cds-NP_015213.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:315784-316968:- | gene-YPL112C_CBS6413 | rna-NM_001183926.1_CBS6413 | cds-NP_015213.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:337385-338569:- | gene-YPL112C_CENPK1137D | rna-NM_001183926.1_CENPK1137D | cds-NP_015213.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:313765-314949:- | gene-YPL112C_EthanolRed | rna-NM_001183926.1_EthanolRed | cds-NP_015213.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:321357-322541:- | gene-YPL112C_FaliES1 | rna-NM_001183926.1_FaliES1 | cds-NP_015213.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:43275-44459:+ | gene-YPL112C_JAY291 | rna-NM_001183926.1_JAY291 | cds-NP_015213.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:332320-333504:- | gene-YPL112C_MUCL30387 | rna-NM_001183926.1_MUCL30387 | cds-NP_015213.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:330591-331775:- | gene-YPL112C_MUCL30388 | rna-NM_001183926.1_MUCL30388 | cds-NP_015213.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:312477-313661:- | gene-YPL112C_MUCL39482 | rna-NM_001183926.1_MUCL39482 | cds-NP_015213.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:369720-370904:- | gene-YPL112C_MUCL42920 | rna-NM_001183926.1_MUCL42920 | cds-NP_015213.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:337419-338603:- | gene-YPL112C_NCIM3186 | rna-NM_001183926.1_NCIM3186 | cds-NP_015213.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:318930-320114:- | gene-YPL112C_NCYC1407 | rna-NM_001183926.1_NCYC1407 | cds-NP_015213.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:326423-327607:- | gene-YPL112C_PE2H3 | rna-NM_001183926.1_PE2H3 | cds-NP_015213.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:326046-327230:- | gene-YPL112C_PE2H4 | rna-NM_001183926.1_PE2H4 | cds-NP_015213.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:337436-338620:- | gene-YPL112C_S288C | rna-NM_001183926.1_S288C | cds-NP_015213.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:35061-36245:+ | gene-YPL112C_SA1 | rna-NM_001183926.1_SA1 | cds-NP_015213.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:321155-322339:- | gene-YPL112C_ThermosaccDry | rna-NM_001183926.1_ThermosaccDry | cds-NP_015213.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:336135-337319:- | gene-YPL112C_VR1 | rna-NM_001183926.1_VR1 | cds-NP_015213.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:320480-321664:- | gene-YPL112C_ZTW1 | rna-NM_001183926.1_ZTW1 | cds-NP_015213.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:322193-323376:- | gene-YPL112C_Sparadoxus | rna-NM_001183926.1_Sparadoxus | cds-NP_015213.1_Sparadoxus | 90.8 | 99.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |